RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 KIF3AQ9Y496 699 aa16.51■□□□□ 0.23
CLN3-222ENST00000566083 B4GALT3O60512 393 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 GLUD2P49448 558 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 AFF1P51825 1210 aaKnown RBP16.5■□□□□ 0.23
CLN3-222ENST00000566083 PTPN5P54829 565 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 GRIK3Q13003 919 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 MAPK6Q16659 721 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 TTC38Q5R3I4 469 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 CDCA2Q69YH5 1023 aaPredicted RBP16.5■□□□□ 0.23
CLN3-222ENST00000566083 APBB1IPQ7Z5R6 666 aaPredicted RBP16.5■□□□□ 0.23
CLN3-222ENST00000566083 NOSTRINQ8IVI9 506 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 KREMEN2Q8NCW0 462 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 HDAC7Q8WUI4 952 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 ADPGKQ9BRR6 497 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 RNF39Q9H2S5 420 aa16.5■□□□□ 0.23
CLN3-222ENST00000566083 ARHGEF35A5YM69 484 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 C2CD4DB7Z1M9 353 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 WNT7AO00755 349 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 N4BP3O15049 544 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 SSBP05455 408 aaKnown RBP eCLIP16.49■□□□□ 0.23
CLN3-222ENST00000566083 CYP11B2P19099 503 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 SCNN1GP51170 649 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 EFNA5P52803 228 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 GUCY1B3Q02153 619 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 DSG1Q02413 1049 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 NHLH1Q02575 133 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 ST3GAL1Q11201 340 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 PDIA5Q14554 519 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 ZNF174Q15697 407 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 TMEM132AQ24JP5 1023 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 PADI6Q6TGC4 694 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 CCDC149Q6ZUS6 474 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 RNF168Q8IYW5 571 aaPredicted RBP16.49■□□□□ 0.23
CLN3-222ENST00000566083 C12orf76Q8N812 135 aaPredicted RBP16.49■□□□□ 0.23
CLN3-222ENST00000566083 CMASQ8NFW8 434 aaPredicted RBP16.49■□□□□ 0.23
CLN3-222ENST00000566083 ASIC4Q96FT7 647 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 ZFP42Q96MM3 310 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 APOL6Q9BWW8 343 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 FZD8Q9H461 694 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 NXF3Q9H4D5 531 aaKnown RBP16.49■□□□□ 0.23
CLN3-222ENST00000566083 PARP2Q9UGN5 583 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 HES2Q9Y543 173 aa16.49■□□□□ 0.23
CLN3-222ENST00000566083 LAD1O00515 517 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 MED24O75448 989 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 SEC24BO95487 1268 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 NPTXRO95502 500 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 GLUD1P00367 558 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 CENPBP07199 599 aaPredicted RBP16.48■□□□□ 0.23
CLN3-222ENST00000566083 SP100P23497 879 aaPredicted RBP16.48■□□□□ 0.23
CLN3-222ENST00000566083 NAMPTP43490 491 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 FXR2P51116 673 aaKnown RBP eCLIP16.48■□□□□ 0.23
CLN3-222ENST00000566083 USP41Q3LFD5 358 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 KIAA0319Q5VV43 1072 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 TMC5Q6UXY8 1006 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 STAMQ92783 540 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 KIFAP3Q92845 792 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 IFT74Q96LB3 600 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 PLEKHA4Q9H4M7 779 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 RXFP1Q9HBX9 757 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 MARCH5Q9NX47 278 aa16.48■□□□□ 0.23
CLN3-222ENST00000566083 ACKR2O00590 384 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 B4GALT5O43286 388 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 EFEMP2O95967 443 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 PRPF4BQ13523 1007 aaKnown RBP16.47■□□□□ 0.23
CLN3-222ENST00000566083 MAEAQ7L5Y9 396 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 DEPTORQ8TB45 409 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 GPRC5CQ9NQ84 441 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 CHST7Q9NS84 486 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 FNIP2Q9P278 1114 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 LRWD1Q9UFC0 647 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 ADAM28Q9UKQ2 775 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 TRIOO75962 3097 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 PHLPP2Q6ZVD8 1323 aa16.47■□□□□ 0.23
CLN3-222ENST00000566083 C2CD2LO14523 706 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 TEX28O15482 410 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 TADA2AO75478 443 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 AKAP5P24588 427 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 U2AF2P26368 475 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLN3-222ENST00000566083 CCT6AP40227 531 aaKnown RBP16.46■□□□□ 0.23
CLN3-222ENST00000566083 ELAVL2Q12926 359 aaKnown RBP16.46■□□□□ 0.23
CLN3-222ENST00000566083 TUSC3Q13454 348 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 FUT10Q6P4F1 479 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 POTEGQ6S5H5 508 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 GSTCDQ8NEC7 633 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 MIOSQ9NXC5 875 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 LIMD1Q9UGP4 676 aa16.46■□□□□ 0.23
CLN3-222ENST00000566083 TDRD15B5MCY1 1934 aaKnown RBP16.46■□□□□ 0.23
CLN3-222ENST00000566083 SF3B1O75533 1304 aaKnown RBP eCLIP16.46■□□□□ 0.233e-9■■■■■ 164.7
CLN3-222ENST00000566083 WEE2P0C1S8 567 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 AVPR2P30518 371 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 DCAF4L1Q3SXM0 396 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 PDXDC1Q6P996 788 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 ALYREFQ86V81 257 aaKnown RBP16.45■□□□□ 0.22
CLN3-222ENST00000566083 KCTD17Q8N5Z5 321 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 MAN1C1Q9NR34 630 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 KCNG1Q9UIX4 513 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 CDH22Q9UJ99 828 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 A0A087WWV3 80 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 PRKCBP05771 671 aa16.45■□□□□ 0.22
CLN3-222ENST00000566083 THP07101 528 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms