RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 NT5C3AQ9H0P0 336 aa20.27■□□□□ 0.84
CLN3-221ENST00000566057 PARP2Q9UGN5 583 aa20.27■□□□□ 0.84
CLN3-221ENST00000566057 CLIC4Q9Y696 253 aa20.27■□□□□ 0.84
CLN3-221ENST00000566057 MYH15Q9Y2K3 1946 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 CCDC169A6NNP5 214 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 K7ERI5 159 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 CLASP2O75122 1294 aaKnown RBP20.26■□□□□ 0.83
CLN3-221ENST00000566057 SSBP05455 408 aaKnown RBP eCLIP20.26■□□□□ 0.83
CLN3-221ENST00000566057 CTSAP10619 480 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 SLC12A3P55017 1021 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 RAD51AP2Q09MP3 1159 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 TMEM132AQ24JP5 1023 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 GJD3Q8N144 294 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 KCTD17Q8N5Z5 321 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 AK8Q96MA6 479 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 CXCL16Q9H2A7 254 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 MARCH5Q9NX47 278 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 SNTG2Q9NY99 539 aa20.26■□□□□ 0.83
CLN3-221ENST00000566057 PRG3Q9Y2Y8 225 aaPredicted RBP20.26■□□□□ 0.83
CLN3-221ENST00000566057 F8W810 466 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 BMP15O95972 392 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 PLA2G4BP0C869 781 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 GUCY2CP25092 1073 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 CA8P35219 290 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 OR1G1P47890 313 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 ZP2Q05996 745 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 PTPAQ15257 358 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 ARSHQ5FYA8 562 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 TAS1R3Q7RTX0 852 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 CDK5RAP3Q96JB5 506 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 DRC1Q96MC2 740 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 PRKAG3Q9UGI9 489 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 MTMR6Q9Y217 621 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 IRAK3Q9Y616 596 aa20.25■□□□□ 0.83
CLN3-221ENST00000566057 CITO14578 2027 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 NPHP3-ACAD11A0A0J9YXS1 232 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.24■□□□□ 0.83
CLN3-221ENST00000566057 FSD2A1L4K1 749 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 C19orf67A6NJJ6 358 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 SSTR3P32745 418 aaPredicted RBP20.24■□□□□ 0.83
CLN3-221ENST00000566057 UBA7P41226 1012 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 DMP1Q13316 513 aaPredicted RBP20.24■□□□□ 0.83
CLN3-221ENST00000566057 TAS1R1Q7RTX1 841 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 ADHFE1Q8IWW8 467 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 SNX21Q969T3 373 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 EPHX3Q9H6B9 360 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 KMT5AQ9NQR1 393 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 ARHGAP28Q9P2N2 729 aa20.24■□□□□ 0.83
CLN3-221ENST00000566057 USP15Q9Y4E8 981 aaPredicted RBP20.24■□□□□ 0.83
CLN3-221ENST00000566057 SLC16A4O15374 487 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 EFEMP2O95967 443 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 LONP1P36776 959 aaKnown RBP20.23■□□□□ 0.83
CLN3-221ENST00000566057 BMS1Q14692 1282 aaKnown RBP20.23■□□□□ 0.83
CLN3-221ENST00000566057 PTPN14Q15678 1187 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 ATF7IP2Q5U623 682 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 ANKRD54Q6NXT1 300 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 SYCE2Q6PIF2 218 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 RABGGTAQ92696 567 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 ACO2Q99798 780 aaKnown RBP20.23■□□□□ 0.83
CLN3-221ENST00000566057 ADPGKQ9BRR6 497 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 NTPCRQ9BSD7 190 aaKnown RBP20.23■□□□□ 0.83
CLN3-221ENST00000566057 TIPINQ9BVW5 301 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 S1PR5Q9H228 398 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 TMEM134Q9H6X4 195 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 C17orf75Q9HAS0 396 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 BLOC1S4Q9NUP1 217 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 CACNG4Q9UBN1 327 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 HCFC2Q9Y5Z7 792 aa20.23■□□□□ 0.83
CLN3-221ENST00000566057 ZMYM2Q9UBW7 1377 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 PLXNA3P51805 1871 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 PTGESO14684 152 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 SLC26A4O43511 780 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 LILRB3O75022 631 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 RECQL4O94761 1208 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
CLN3-221ENST00000566057 CACNB1Q02641 598 aaPredicted RBP20.22■□□□□ 0.83
CLN3-221ENST00000566057 GRIK3Q13003 919 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 KARSQ15046 597 aaKnown RBP20.22■□□□□ 0.83
CLN3-221ENST00000566057 SPECC1Q5M775 1068 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 USP49Q70CQ1 688 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 CALML4Q96GE6 196 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 APOL5Q9BWW9 433 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 TNFSF13BQ9Y275 285 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 GDAQ9Y2T3 454 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 PHLPP2Q6ZVD8 1323 aa20.22■□□□□ 0.83
CLN3-221ENST00000566057 STX6O43752 255 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 PLS3P13797 630 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 PLCG1P19174 1290 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 CEBPZQ03701 1054 aaKnown RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 GIT2Q14161 759 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 DHX8Q14562 1220 aaKnown RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 DCAF4L1Q3SXM0 396 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 SLC22A17Q8WUG5 538 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 SUSD6Q92537 303 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 EPSTI1Q96J88 318 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 RPS6KC1Q96S38 1066 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 PAAF1Q9BRP4 392 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 TARS2Q9BW92 718 aaKnown RBP20.21■□□□□ 0.83
CLN3-221ENST00000566057 PTPRHQ9HD43 1115 aa20.21■□□□□ 0.83
CLN3-221ENST00000566057 KCND2Q9NZV8 630 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms