RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CCDC73Q6ZRK6 1079 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 HAUS6Q7Z4H7 955 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ZBTB8OSQ8IWT0 167 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 SLC39A11Q8N1S5 342 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 KLHL23Q8NBE8 558 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 ZSWIM2Q8NEG5 633 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 FBXO22Q8NEZ5 403 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 SPPL3Q8TCT6 385 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 IFT74Q96LB3 600 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 SPATA32Q96LK8 384 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 TNMDQ9H2S6 317 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 NRDE2Q9H7Z3 1164 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 RSAD1Q9HA92 442 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 MARCH5Q9NX47 278 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 SERTAD1Q9UHV2 236 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 CFAP45Q9UL16 551 aa10.84□□□□□ -0.67
CLN3-220ENST00000566040 A0A1W2PQ27 194 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 A0A1W2PQ64 194 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 A0A1W2PQD8 194 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 RECQL4O94761 1208 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 MYBP10242 640 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 FOSL2P15408 326 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 LIG1P18858 919 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 SLC11A1P49279 550 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 SCNN1GP51170 649 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 WNT7BP56706 349 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 COASYQ13057 564 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 CUL4BQ13620 913 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 XKR4Q5GH76 650 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 NOMO2Q5JPE7 1267 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 CD300LGQ6UXG3 332 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 ALKAL1Q6UXT8 129 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 EPM2AIP1Q7L775 607 aaPredicted RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 MAP4K3Q8IVH8 894 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 RNF168Q8IYW5 571 aaPredicted RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 LRRC43Q8N309 656 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 ENGASEQ8NFI3 743 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 P2RX5Q93086 422 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 ZMAT2Q96NC0 199 aaKnown RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 SAMD11Q96NU1 681 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 GAD1Q99259 594 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 C7orf25Q9BPX7 421 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 PAAF1Q9BRP4 392 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 PARVGQ9HBI0 331 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 ALG13Q9NP73 1137 aaKnown RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 OLFML3Q9NRN5 406 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 SNTG2Q9NY99 539 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 CCDC39Q9UFE4 941 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 KCNH3Q9ULD8 1083 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 LRFN2Q9ULH4 789 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 CIZ1Q9ULV3 898 aaPredicted RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 TBX20Q9UMR3 447 aa10.83□□□□□ -0.68
CLN3-220ENST00000566040 TCF20Q9UGU0 1960 aaKnown RBP10.83□□□□□ -0.68
CLN3-220ENST00000566040 K7ENM7 598 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 K7ERI5 159 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 FSCN2O14926 492 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 N4BP3O15049 544 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 TRAK2O60296 914 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 GADD45BO75293 160 aaPredicted RBP10.82□□□□□ -0.68
CLN3-220ENST00000566040 FAM13AO94988 1023 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 ADSSP30520 456 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 BCAR1P56945 870 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 NUCB2P80303 420 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 SOX4Q06945 474 aaPredicted RBP10.82□□□□□ -0.68
CLN3-220ENST00000566040 MCL1Q07820 350 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 GPM6BQ13491 265 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 SNW1Q13573 536 aaKnown RBP10.82□□□□□ -0.68
CLN3-220ENST00000566040 SEZ6Q53EL9 994 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 KCNT2Q6UVM3 1135 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 SV2BQ7L1I2 683 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 ZNF720Q7Z2F6 126 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 ADGRD2Q7Z7M1 963 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 COLGALT2Q8IYK4 626 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 MAFAQ8NHW3 353 aaPredicted RBP10.82□□□□□ -0.68
CLN3-220ENST00000566040 PLVAPQ9BX97 442 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 BLZF1Q9H2G9 400 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 CUEDC2Q9H467 287 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 KLK14Q9P0G3 267 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 INPP5FQ9Y2H2 1132 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 RBM19Q9Y4C8 960 aaKnown RBP10.82□□□□□ -0.68
CLN3-220ENST00000566040 STYXL1Q9Y6J8 313 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 DOCK6Q96HP0 2047 aa10.82□□□□□ -0.68
CLN3-220ENST00000566040 NT5C1B-RDH14C9J2C7 533 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 HOXA2O43364 376 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 POMCP01189 267 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 RB1P06400 928 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 ADRB2P07550 413 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 GALTP07902 379 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 SLFN14P0C7P3 912 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 SKIP12755 728 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 ITGA4P13612 1032 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 GTF2F1P35269 517 aaKnown RBP eCLIP10.81□□□□□ -0.68
CLN3-220ENST00000566040 TXLNAP40222 546 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 TNFSF9P41273 254 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 GRM5P41594 1212 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 ERVFC1P60507 584 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 MPZL3Q6UWV2 235 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 CRELD2Q6UXH1 353 aaPredicted RBP10.81□□□□□ -0.68
CLN3-220ENST00000566040 ZPBP2Q6X784 338 aa10.81□□□□□ -0.68
CLN3-220ENST00000566040 FMR1NBQ8N0W7 255 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms