RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 CPB2Q96IY4 423 aa13.81□□□□□ -0.2
SF3B3-206ENST00000565990 ZBTB45Q96K62 511 aaPredicted RBP13.81□□□□□ -0.2
SF3B3-206ENST00000565990 HAPLN2Q9GZV7 340 aa13.81□□□□□ -0.2
SF3B3-206ENST00000565990 PDCL3Q9H2J4 239 aa13.81□□□□□ -0.2
SF3B3-206ENST00000565990 IKZF4Q9H2S9 585 aa13.81□□□□□ -0.2
SF3B3-206ENST00000565990 PRO3102Q9H379 93 aa13.81□□□□□ -0.2
SF3B3-206ENST00000565990 ELAC1Q9H777 363 aaKnown RBP13.81□□□□□ -0.2
SF3B3-206ENST00000565990 CGNQ9P2M7 1197 aaKnown RBP13.81□□□□□ -0.2
SF3B3-206ENST00000565990 PIN4Q9Y237 131 aaKnown RBP13.81□□□□□ -0.2
SF3B3-206ENST00000565990 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.81□□□□□ -0.2
SF3B3-206ENST00000565990 PTPRSQ13332 1948 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 TRIP11Q15643 1979 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 PDXKO00764 312 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 EOMESO95936 686 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MCF2P10911 925 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 CD44P16070 742 aaKnown RBP13.8□□□□□ -0.2
SF3B3-206ENST00000565990 GARTP22102 1010 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 CDC25BP30305 580 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 NLRP12P59046 1061 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MCL1Q07820 350 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MYBPC2Q14324 1141 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 NFIL3Q16649 462 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 CT47A1Q5JQC4 288 aaPredicted RBP13.8□□□□□ -0.2
SF3B3-206ENST00000565990 EEF1DP3Q658K8 133 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 ISM2Q6H9L7 571 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 FOXR2Q6PJQ5 311 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MPZL3Q6UWV2 235 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.8□□□□□ -0.2
SF3B3-206ENST00000565990 C12orf56Q8IXR9 622 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MLKLQ8NB16 471 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 TOP1MTQ969P6 601 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 GBP3Q9H0R5 595 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 SEMA6BQ9H3T3 888 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 FAM105AQ9NUU6 356 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 DMAC2Q9NW81 257 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 MAPK8IP1Q9UQF2 711 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 TRAF3IP3Q9Y228 551 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 ZMYM2Q9UBW7 1377 aa13.8□□□□□ -0.2
SF3B3-206ENST00000565990 BIN1O00499 593 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 HNRNPDLO14979 420 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 CLDN3O15551 220 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 FAM189A1O60320 539 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 LIG4P49917 911 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 RAB27AP51159 221 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 WDR5P61964 334 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 POU5F1Q01860 360 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 TYRO3Q06418 890 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 OTOP2Q7RTS6 562 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 ECHDC2Q86YB7 292 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 SLC9A9Q8IVB4 645 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 SMYD4Q8IYR2 804 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 SYCP3Q8IZU3 236 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 SMG8Q8ND04 991 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 PHOSPHO2Q8TCD6 241 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 EIF2AQ9BY44 585 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 TYW1Q9NV66 732 aaKnown RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 RNF216Q9NWF9 866 aaPredicted RBP13.79□□□□□ -0.2
SF3B3-206ENST00000565990 PCDHB2Q9Y5E7 798 aa13.79□□□□□ -0.2
SF3B3-206ENST00000565990 FNDC1Q4ZHG4 1894 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 TISP43B9A030 160 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 KIAA0391O15091 583 aaKnown RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 ATF7P17544 494 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 GTF2F1P35269 517 aaKnown RBP eCLIP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 MCCD1P59942 119 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 SHHQ15465 462 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 DCAF4L1Q3SXM0 396 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 ZCWPW2Q504Y3 356 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 TWF2Q6IBS0 349 aaKnown RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 APBB1IPQ7Z5R6 666 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 CDR2LQ86X02 465 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 NELFCDQ8IXH7 590 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 GOLGA5Q8TBA6 731 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 FBXL18Q96ME1 805 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 ADPGKQ9BRR6 497 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 TCHPQ9BT92 498 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 CDT1Q9H211 546 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 AGPAT3Q9NRZ7 376 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 TMEM161AQ9NX61 479 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 CXXC1Q9P0U4 656 aaPredicted RBP13.78□□□□□ -0.2
SF3B3-206ENST00000565990 IPPQ9Y573 584 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 CITO14578 2027 aa13.78□□□□□ -0.2
SF3B3-206ENST00000565990 AMHP03971 560 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 ADRB2P07550 413 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 ANK1P16157 1881 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 CCNE1P24864 410 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 GRM5P41594 1212 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 STIM1Q13586 685 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 NOLC1Q14978 699 aaKnown RBP eCLIP13.77□□□□□ -0.211e-7■■■■■ 28
SF3B3-206ENST00000565990 KYAT1Q16773 422 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 EDRF1Q3B7T1 1238 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 C9orf50Q5SZB4 431 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 ANKRD40Q6AI12 368 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 SARM1Q6SZW1 724 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 CRELD2Q6UXH1 353 aaPredicted RBP13.77□□□□□ -0.21
SF3B3-206ENST00000565990 ALKAL1Q6UXT8 129 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 ZBTB33Q86T24 672 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 PGBD4Q96DM1 585 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 BICD1Q96G01 975 aa13.77□□□□□ -0.21
SF3B3-206ENST00000565990 UBE2OQ9C0C9 1292 aaKnown RBP13.77□□□□□ -0.21
SF3B3-206ENST00000565990 RNF39Q9H2S5 420 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms