RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 ZBTB8OSQ8IWT0 167 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 RNF168Q8IYW5 571 aaPredicted RBP11.97□□□□□ -0.49
VPS39-208ENST00000564994 C12orf76Q8N812 135 aaPredicted RBP11.97□□□□□ -0.49
VPS39-208ENST00000564994 TBC1D32Q96NH3 1257 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 KLHL5Q96PQ7 755 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 MMTAG2Q9BU76 263 aaKnown RBP11.97□□□□□ -0.49
VPS39-208ENST00000564994 CXCL16Q9H2A7 254 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 ADAM7Q9H2U9 754 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 PDZD7Q9H5P4 517 aa11.97□□□□□ -0.49
VPS39-208ENST00000564994 ZDBF2Q9HCK1 2354 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 LAD1O00515 517 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 ACKR2O00590 384 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 SOD2P04179 222 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 PRKCBP05771 671 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 CNPP09543 421 aaKnown RBP11.96□□□□□ -0.49
VPS39-208ENST00000564994 WEE2P0C1S8 567 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 PRPHP41219 470 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 TPRNQ4KMQ1 711 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 EEF1DP3Q658K8 133 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 DTHD1Q6ZMT9 781 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 HACE1Q8IYU2 909 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 RABGGTAQ92696 567 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 HERC2P3Q9BVR0 1158 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 C2orf40Q9H1Z8 148 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 POMKQ9H5K3 350 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 UPF2Q9HAU5 1272 aaKnown RBP11.96□□□□□ -0.49
VPS39-208ENST00000564994 CACNG4Q9UBN1 327 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 PARP2Q9UGN5 583 aa11.96□□□□□ -0.49
VPS39-208ENST00000564994 VWA8A3KMH1 1905 aa11.96□□□□□ -0.5
VPS39-208ENST00000564994 ZMYM2Q9UBW7 1377 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 C2CD2LO14523 706 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 LIG1P18858 919 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 SP100P23497 879 aaPredicted RBP11.95□□□□□ -0.5
VPS39-208ENST00000564994 CLCN4P51793 760 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 ATP2C1P98194 919 aaPredicted RBP11.95□□□□□ -0.5
VPS39-208ENST00000564994 ITIH3Q06033 890 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 PRPF4BQ13523 1007 aaKnown RBP11.95□□□□□ -0.5
VPS39-208ENST00000564994 PPP2R5AQ15172 486 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 MAPK6Q16659 721 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 RILPL1Q5EBL4 403 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 RARS2Q5T160 578 aaKnown RBP11.95□□□□□ -0.5
VPS39-208ENST00000564994 NT5DC1Q5TFE4 455 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 KIAA0319Q5VV43 1072 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 KRT79Q5XKE5 535 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 DAW1Q8N136 415 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 TMEM87AQ8NBN3 555 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 DEPTORQ8TB45 409 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 EDAQ92838 391 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 KIFAP3Q92845 792 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 PNMA5Q96PV4 448 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 PAAF1Q9BRP4 392 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 RUSC1Q9BVN2 902 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 RAB34Q9BZG1 259 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 MRPL17Q9NRX2 175 aaKnown RBP11.95□□□□□ -0.5
VPS39-208ENST00000564994 SNTG2Q9NY99 539 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 STK39Q9UEW8 545 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 KIF3AQ9Y496 699 aa11.95□□□□□ -0.5
VPS39-208ENST00000564994 CITO14578 2027 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 H3BQV1 296 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 PTGESO14684 152 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 N4BP3O15049 544 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 RECQL4O94761 1208 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 URODP06132 367 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 KLRC2P26717 231 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 MCM2P49736 904 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 GRIK3Q13003 919 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 MAPK7Q13164 816 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 NAB2Q15742 525 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 CES5AQ6NT32 575 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 RINT1Q6NUQ1 792 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 HFE2Q6ZVN8 426 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 C1orf186Q6ZWK4 172 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 PPFIBP1Q86W92 1011 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 B3GALT6Q96L58 329 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 IFT74Q96LB3 600 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 FBXL18Q96ME1 805 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 RPS6KC1Q96S38 1066 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 COLEC11Q9BWP8 271 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 EMILIN2Q9BXX0 1053 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 GPR62Q9BZJ7 368 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 CHST7Q9NS84 486 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 DZANK1Q9NVP4 752 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 DNM3Q9UQ16 869 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 SMC3Q9UQE7 1217 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 HCN4Q9Y3Q4 1203 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 STK24Q9Y6E0 443 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 DOCK6Q96HP0 2047 aa11.94□□□□□ -0.5
VPS39-208ENST00000564994 C2CD4DB7Z1M9 353 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TEX28O15482 410 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 HIP1RO75146 1068 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 NPTX2P47972 431 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 GLUD2P49448 558 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 EFNA5P52803 228 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 PEX3P56589 373 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 ZXDAP98168 799 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 DSG1Q02413 1049 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 TMEM132AQ24JP5 1023 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 HYIQ5T013 277 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 ATF7IP2Q5U623 682 aa11.93□□□□□ -0.5
VPS39-208ENST00000564994 KIAA1841Q6NSI8 718 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms