RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 TMEM192Q8IY95 271 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 HELQQ8TDG4 1101 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 ARNTL2Q8WYA1 636 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 STAMQ92783 540 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 LPPQ93052 612 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 P2RX5Q93086 422 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 BICD1Q96G01 975 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 C11orf84Q9BUA3 381 aaPredicted RBP14.25□□□□□ -0.13
NEDD8-208ENST00000560427 CDT1Q9H211 546 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 TMEM206Q9H813 350 aa14.25□□□□□ -0.13
NEDD8-208ENST00000560427 ABLIM1O14639 778 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 EIF3DO15371 548 aaKnown RBP eCLIP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 CLDN3O15551 220 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 GCNT3O95395 438 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 CTNNB1P35222 781 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 PPM1AP35813 382 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 BMPR1AP36894 532 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 GRM5P41594 1212 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 AFMP43652 599 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 EHHADHQ08426 723 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 CUL4BQ13620 913 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 GRIN2CQ14957 1233 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 FAM26FQ5R3K3 315 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 L1TD1Q5T7N2 865 aaKnown RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 SLFN12LQ6IEE8 588 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 FMR1NBQ8N0W7 255 aaPredicted RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 FBXO22Q8NEZ5 403 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 TIGD1Q96MW7 591 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 ACCSQ96QU6 501 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 GAS2L1Q99501 681 aaPredicted RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 C17orf80Q9BSJ5 609 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 TCHPQ9BT92 498 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 CCDC94Q9BW85 323 aaPredicted RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 TOPORSQ9NS56 1045 aaPredicted RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 TYW1Q9NV66 732 aaKnown RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 HOOK1Q9UJC3 728 aaKnown RBP14.24□□□□□ -0.13
NEDD8-208ENST00000560427 HES2Q9Y543 173 aa14.24□□□□□ -0.13
NEDD8-208ENST00000560427 FNDC1Q4ZHG4 1894 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 MEIS3P2A8K0S8 358 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 H3BNC9 293 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 POU3F3P20264 500 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 MLH1P40692 756 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 YARSP54577 528 aaKnown RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 UBE2HP62256 183 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 GRIK3Q13003 919 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 SNW1Q13573 536 aaKnown RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 SPOUT1Q5T280 376 aaKnown RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 ELOA2Q8IYF1 753 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 ENGASEQ8NFI3 743 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 CCDC47Q96A33 483 aaKnown RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 FAM161BQ96MY7 647 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 GUCD1Q96NT3 240 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 RPS6KC1Q96S38 1066 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 CDX2Q99626 313 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 LMAN2LQ9H0V9 348 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 BLZF1Q9H2G9 400 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 PRDM12Q9H4Q4 367 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 CWH43Q9H720 699 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 TBC1D13Q9NVG8 400 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 LMCD1Q9NZU5 365 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 ANKFY1Q9P2R3 1169 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 STK39Q9UEW8 545 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 INPP5FQ9Y2H2 1132 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 USP20Q9Y2K6 914 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 PCDHB12Q9Y5F1 795 aa14.23□□□□□ -0.13
NEDD8-208ENST00000560427 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.23□□□□□ -0.13
NEDD8-208ENST00000560427 ARL5CA6NH57 179 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 RECQL4O94761 1208 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 UBE3AQ05086 875 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 RNASELQ05823 741 aaKnown RBP14.22□□□□□ -0.13
NEDD8-208ENST00000560427 PSMD2Q13200 908 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 POSTNQ15063 836 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 ZC2HC1CQ53FD0 456 aaPredicted RBP14.22□□□□□ -0.13
NEDD8-208ENST00000560427 LRRC55Q6ZSA7 311 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 GRAMD1CQ8IYS0 662 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 COLGALT1Q8NBJ5 622 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 ZNF558Q96NG5 402 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 GBP4Q96PP9 640 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 GAD1Q99259 594 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 TMEM175Q9BSA9 504 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 APOL6Q9BWW8 343 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 EXOC1Q9NV70 894 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 SNTG2Q9NY99 539 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 TBC1D7Q9P0N9 293 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 PARP2Q9UGN5 583 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 MTUS1Q9ULD2 1270 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 STYXL1Q9Y6J8 313 aa14.22□□□□□ -0.13
NEDD8-208ENST00000560427 COL4A4P53420 1690 aaPredicted RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 A0A0B4J269 797 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 KIAA0391O15091 583 aaKnown RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 KLRC4O43908 158 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 KINO60870 393 aaKnown RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 MYBP10242 640 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 AKAP5P24588 427 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 ALDH7A1P49419 539 aaKnown RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 CASP5P51878 434 aa14.21□□□□□ -0.13
NEDD8-208ENST00000560427 SNRPFP62306 86 aaKnown RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 POU5F1Q01860 360 aaKnown RBP14.21□□□□□ -0.13
NEDD8-208ENST00000560427 DPYDQ12882 1025 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms