RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CCDC155Q8N6L0 562 aa12.22□□□□□ -0.45
USP3-218ENST00000560202 MFSD14AQ96MC6 490 aa12.22□□□□□ -0.45
USP3-218ENST00000560202 OSMRQ99650 979 aa12.22□□□□□ -0.45
USP3-218ENST00000560202 CCDC94Q9BW85 323 aaPredicted RBP12.22□□□□□ -0.45
USP3-218ENST00000560202 PHF24Q9UPV7 400 aa12.22□□□□□ -0.45
USP3-218ENST00000560202 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.22□□□□□ -0.45
USP3-218ENST00000560202 EVPLQ92817 2033 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 DNM1LO00429 736 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 TSPAN1O60635 241 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 ERLIN2O94905 339 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 RPLP2P05387 115 aaKnown RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 TRIM49P0CI25 452 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 TRIM49CP0CI26 452 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 HARSP12081 509 aaKnown RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 ARF4P18085 180 aaPredicted RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 EIF4BP23588 611 aaKnown RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 ACOT2P49753 483 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 LBX1P52954 281 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 CRYBB1P53674 252 aaPredicted RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 DLG4P78352 724 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 ARID5BQ14865 1188 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 EEF1DP3Q658K8 133 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 FBXO46Q6PJ61 603 aaPredicted RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 CRELD2Q6UXH1 353 aaPredicted RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 RPAINQ86UA6 219 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 PPFIBP1Q86W92 1011 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 PLEKHO2Q8TD55 490 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 PCMTD1Q96MG8 357 aaPredicted RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 CELF4Q9BZC1 486 aaKnown RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 STARD7Q9NQZ5 370 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 OGDHLQ9ULD0 1010 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 SIK3Q9Y2K2 1263 aa12.21□□□□□ -0.45
USP3-218ENST00000560202 R3HCC1Q9Y3T6 440 aaKnown RBP12.21□□□□□ -0.45
USP3-218ENST00000560202 KAT6AQ92794 2004 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 OGTO15294 1046 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 FGFR4P22455 802 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 CTCFP49711 727 aaPredicted RBP12.2□□□□□ -0.46
USP3-218ENST00000560202 KLK7P49862 253 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 MRPS6P82932 125 aaKnown RBP12.2□□□□□ -0.46
USP3-218ENST00000560202 ENPEPQ07075 957 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 CYP24A1Q07973 514 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 RBL2Q08999 1139 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 KCNMA1Q12791 1236 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 TRIM14Q14142 442 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 NOLC1Q14978 699 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP3-218ENST00000560202 SNX17Q15036 470 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 PCBP1Q15365 356 aaKnown RBP eCLIP12.2□□□□□ -0.46
USP3-218ENST00000560202 ZNF568Q3ZCX4 644 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 CDR2LQ86X02 465 aaPredicted RBP12.2□□□□□ -0.46
USP3-218ENST00000560202 SLC43A3Q8NBI5 491 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 TMC2Q8TDI7 906 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 PARD3BQ8TEW8 1205 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 WNT8BQ93098 351 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 CCDC127Q96BQ5 260 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 CPB2Q96IY4 423 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 NUP58Q9BVL2 599 aa12.2□□□□□ -0.46
USP3-218ENST00000560202 A0A0U1RQG5 324 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 M0QZ92 97 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 FAM189A1O60320 539 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 GYPCP04921 128 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 HSPA1AP0DMV8 641 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 HSPA1BP0DMV9 641 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 FMO5P49326 533 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 NCBP1Q09161 790 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 PTK7Q13308 1070 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 SEZ6Q53EL9 994 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 ZBTB41Q5SVQ8 909 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 C1orf220Q5T0J3 134 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CATSPER4Q7RTX7 472 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 USP37Q86T82 979 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CCDC150Q8NCX0 1101 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CACTINQ8WUQ7 758 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 CPLX3Q8WVH0 158 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TMEM40Q8WWA1 233 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 ZNF830Q96NB3 372 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 CRACR2AQ9BSW2 395 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CDT1Q9H211 546 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 PDZD7Q9H5P4 517 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 MMRN2Q9H8L6 949 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TRMT13Q9NUP7 481 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 RBAKQ9NYW8 714 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 NOD1Q9Y239 953 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TRPV2Q9Y5S1 764 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 CDY2AQ9Y6F7 541 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 A0A1B0GUA9 196 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 GTPBP10A4D1E9 387 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 LRRIQ3A6PVS8 624 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 AKR1B15C9JRZ8 316 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 ARVCFO00192 962 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TULP1O00294 542 aaPredicted RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 STX10O60499 249 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TPM1P09493 284 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 MCF2P10911 925 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 TRIM21P19474 475 aaKnown RBP12.19□□□□□ -0.46
USP3-218ENST00000560202 SFPQP23246 707 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP3-218ENST00000560202 CASP14P31944 242 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 FXR1P51114 621 aaKnown RBP eCLIP12.19□□□□□ -0.46
USP3-218ENST00000560202 PPP3CAQ08209 521 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 DMTNQ08495 405 aa12.19□□□□□ -0.46
USP3-218ENST00000560202 GOLGA8FQ08AF8 430 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms