RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 FAM193BQ96PV7 902 aaPredicted RBP9.39□□□□□ -0.91
USP3-217ENST00000560070 LRRC27Q9C0I9 530 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 IGFLR1Q9H665 355 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 NRDE2Q9H7Z3 1164 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 MRPL44Q9H9J2 332 aaKnown RBP9.39□□□□□ -0.91
USP3-217ENST00000560070 UBN1Q9NPG3 1134 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 PRDM6Q9NQX0 595 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 TSHZ2Q9NRE2 1034 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 AAASQ9NRG9 546 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 TBC1D13Q9NVG8 400 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 CHMP5Q9NZZ3 219 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 ANKFY1Q9P2R3 1169 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 DNAJB4Q9UDY4 337 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 KCNG1Q9UIX4 513 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 TBX20Q9UMR3 447 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 PLAGL2Q9UPG8 496 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 TNFSF13BQ9Y275 285 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 STXBP5LQ9Y2K9 1186 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 SSUH2Q9Y2M2 353 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 MTCH2Q9Y6C9 303 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 RANBP2P49792 3224 aaKnown RBP9.39□□□□□ -0.91
USP3-217ENST00000560070 TRIOBPQ9H2D6 2365 aa9.39□□□□□ -0.91
USP3-217ENST00000560070 CNTNAP2Q9UHC6 1331 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 SCN5AQ14524 2016 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 TISP43B9A030 160 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 ANKRD63C9JTQ0 380 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 FGF18O76093 207 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 GCNT3O95395 438 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 ALDH2P05091 517 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 RB1P06400 928 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 DNAJB1P25685 340 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 SYKP43405 635 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 SLC11A1P49279 550 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 ALDH7A1P49419 539 aaKnown RBP9.38□□□□□ -0.91
USP3-217ENST00000560070 LIG4P49917 911 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 ZNF131P52739 623 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 KCNA1Q09470 495 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 CUL4BQ13620 913 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 EP400NLQ6ZTU2 488 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 RBM23Q86U06 439 aaKnown RBP9.38□□□□□ -0.91
USP3-217ENST00000560070 CEP120Q8N960 986 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 SPPL3Q8TCT6 385 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 NOC3LQ8WTT2 800 aaKnown RBP9.38□□□□□ -0.91
USP3-217ENST00000560070 POF1BQ8WVV4 589 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 FAM212AQ96EL1 285 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 PAGE5Q96GU1 130 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 RPS6KC1Q96S38 1066 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 FIZ1Q96SL8 496 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 C7orf25Q9BPX7 421 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 C11orf84Q9BUA3 381 aaPredicted RBP9.38□□□□□ -0.91
USP3-217ENST00000560070 FGFBP2Q9BYJ0 223 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 CDT1Q9H211 546 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 KBTBD4Q9NVX7 518 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 SPG21Q9NZD8 308 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 CACNG4Q9UBN1 327 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 FAN1Q9Y2M0 1017 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 GIT1Q9Y2X7 761 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 PRG3Q9Y2Y8 225 aaPredicted RBP9.38□□□□□ -0.91
USP3-217ENST00000560070 RWDD3Q9Y3V2 267 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 PCDHGC5Q9Y5F6 944 aa9.38□□□□□ -0.91
USP3-217ENST00000560070 PHLPP2Q6ZVD8 1323 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 H0YCG3 227 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 NRP1O14786 923 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 CLDN3O15551 220 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 ACTN4O43707 911 aaKnown RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 B4GALT3O60512 393 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 GADD45BO75293 160 aaPredicted RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 RECQL4O94761 1208 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 PRPF6O94906 941 aaKnown RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 GALTP07902 379 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 SLFN14P0C7P3 912 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 GAP43P17677 238 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 LAG3P18627 525 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 IRS1P35568 1242 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 CASP5P51878 434 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 ERVFC1P60507 584 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 KRT17Q04695 432 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 SPAG1Q07617 926 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 COASYQ13057 564 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 PTPROQ16827 1216 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 DCAF4L1Q3SXM0 396 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 GLRA4Q5JXX5 417 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 MPZL3Q6UWV2 235 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 APBB1IPQ7Z5R6 666 aaPredicted RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 SYCP3Q8IZU3 236 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 LRRC43Q8N309 656 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 GLIS3Q8NEA6 775 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 MRPS27Q92552 414 aaKnown RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 ACCSQ96QU6 501 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 CCDC94Q9BW85 323 aaPredicted RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 MRPL9Q9BYD2 267 aaKnown RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 TRIM9Q9C026 710 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 HAPLN2Q9GZV7 340 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 TNMDQ9H2S6 317 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 CUEDC2Q9H467 287 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 PCIF1Q9H4Z3 704 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 PTPRHQ9HD43 1115 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 KANSL3Q9P2N6 904 aa9.37□□□□□ -0.91
USP3-217ENST00000560070 PUF60Q9UHX1 559 aaKnown RBP9.37□□□□□ -0.91
USP3-217ENST00000560070 CIZ1Q9ULV3 898 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms