RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 NFKBIZQ9BYH8 718 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 CCDC113Q9H0I3 377 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 C2orf40Q9H1Z8 148 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 MARCH5Q9NX47 278 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 KANSL3Q9P2N6 904 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 HCFC2Q9Y5Z7 792 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 CLIC4Q9Y696 253 aa13.81□□□□□ -0.2
SMAD3-208ENST00000558827 TDRD15B5MCY1 1934 aaKnown RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 K7ERI5 159 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 ACKR2O00590 384 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 N4BP3O15049 544 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 SLC16A4O15374 487 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 CTSAP10619 480 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 HARSP12081 509 aaKnown RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 MUTP22033 750 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 MARCKSP29966 332 aaPredicted RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 NPTX2P47972 431 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 OSTNP61366 133 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 COASYQ13057 564 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 PPP2R5AQ15172 486 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 PCBP1Q15365 356 aaKnown RBP eCLIP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 RARS2Q5T160 578 aaKnown RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 FOXD4L5Q5VV16 416 aaPredicted RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 C1orf186Q6ZWK4 172 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 ADHFE1Q8IWW8 467 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 HACE1Q8IYU2 909 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 SMRP1Q8NCR6 262 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 GSTCDQ8NEC7 633 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 LRRC15Q8TF66 581 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 HASPINQ8TF76 798 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 FOXD4L4Q8WXT5 416 aaPredicted RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 KIFAP3Q92845 792 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 CDCA3Q99618 268 aaPredicted RBP13.8□□□□□ -0.2
SMAD3-208ENST00000558827 PAAF1Q9BRP4 392 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 UBN1Q9NPG3 1134 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 GIT1Q9Y2X7 761 aa13.8□□□□□ -0.2
SMAD3-208ENST00000558827 CASTOR2A6NHX0 329 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 RECQL4O94761 1208 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 PLA2G4BP0C869 781 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 SYT1P21579 422 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 MAPK7Q13164 816 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 KCNC3Q14003 757 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 BMS1Q14692 1282 aaKnown RBP13.79□□□□□ -0.2
SMAD3-208ENST00000558827 PTPN14Q15678 1187 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 FAM187BQ17R55 369 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 GLRA4Q5JXX5 417 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 ATF7IP2Q5U623 682 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 GLYCTKQ8IVS8 523 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 RPS6KC1Q96S38 1066 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 TMEM175Q9BSA9 504 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 TARS2Q9BW92 718 aaKnown RBP13.79□□□□□ -0.2
SMAD3-208ENST00000558827 S1PR5Q9H228 398 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 KMT5AQ9NQR1 393 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 STK24Q9Y6E0 443 aa13.79□□□□□ -0.2
SMAD3-208ENST00000558827 TRIP11Q15643 1979 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 C19orf67A6NJJ6 358 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 CNPP09543 421 aaKnown RBP13.78□□□□□ -0.2
SMAD3-208ENST00000558827 SPATA31D3P0C874 917 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 COL9A1P20849 921 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 IGFBP6P24592 240 aaPredicted RBP13.78□□□□□ -0.2
SMAD3-208ENST00000558827 KLRC2P26717 231 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 UBA7P41226 1012 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 DSC1Q08554 894 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 MCM6Q14566 821 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 KARSQ15046 597 aaKnown RBP13.78□□□□□ -0.2
SMAD3-208ENST00000558827 SPATA31D4Q6ZUB0 917 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 USP49Q70CQ1 688 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 TAS1R3Q7RTX0 852 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 CEP120Q8N960 986 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 SPRYD3Q8NCJ5 442 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 RASSF8Q8NHQ8 419 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 CASP10Q92851 521 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 ZBTB45Q96K62 511 aaPredicted RBP13.78□□□□□ -0.2
SMAD3-208ENST00000558827 PRIMPOLQ96LW4 560 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 KLHL5Q96PQ7 755 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 ADPGKQ9BRR6 497 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 COLEC11Q9BWP8 271 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 GPR62Q9BZJ7 368 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 TSHZ2Q9NRE2 1034 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 MUTYHQ9UIF7 546 aa13.78□□□□□ -0.2
SMAD3-208ENST00000558827 SPDYE4A6NLX3 237 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 K7ELQ4 463 aaPredicted RBP13.77□□□□□ -0.21
SMAD3-208ENST00000558827 PTGESO14684 152 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 TADA2AO75478 443 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 SRGAP2BP0DMP2 458 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 RPL17P18621 184 aaKnown RBP13.77□□□□□ -0.21
SMAD3-208ENST00000558827 MYH11P35749 1972 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 SLC12A3P55017 1021 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 RESTQ13127 1097 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 DMP1Q13316 513 aaPredicted RBP13.77□□□□□ -0.21
SMAD3-208ENST00000558827 TMEM119Q4V9L6 283 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 SEZ6Q53EL9 994 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 ARSHQ5FYA8 562 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 ARL6IP4Q66PJ3 421 aaKnown RBP13.77□□□□□ -0.21
SMAD3-208ENST00000558827 TMC5Q6UXY8 1006 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 BRAPQ7Z569 592 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 GPBP1Q86WP2 473 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 RNF135Q8IUD6 432 aa13.77□□□□□ -0.21
SMAD3-208ENST00000558827 SYT2Q8N9I0 419 aaPredicted RBP13.77□□□□□ -0.21
SMAD3-208ENST00000558827 SLC22A17Q8WUG5 538 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms