RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 LMNTD2Q8IXW0 634 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 LRRD1A4D1F6 860 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 CFAP69A5D8W1 941 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 TMEM150BA6NC51 233 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 SPDYE5A6NIY4 337 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 TGFB1I1O43294 461 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 GNAT1P11488 350 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 VCAM1P19320 739 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 SEPT2Q15019 361 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PPP4R3CPQ6ZMV5 832 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 COL23A1Q86Y22 540 aaPredicted RBP12.12□□□□□ -0.47
LDLR-208ENST00000558518 ANKMY2Q8IV38 441 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 CYTH2Q99418 400 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PI4K2AQ9BTU6 479 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PIDD1Q9HB75 910 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 SAYSD1Q9NPB0 183 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PARP2Q9UGN5 583 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 KCNG1Q9UIX4 513 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 NUP98P52948 1817 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 TIAM2Q8IVF5 1701 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 DPPA5A6NC42 116 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 PODXLO00592 558 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 GJB6O95452 261 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 CD58P19256 250 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 GPSM2P81274 684 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 ECHDC2Q86YB7 292 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 SLC13A5Q86YT5 568 aaPredicted RBP12.12□□□□□ -0.47
LDLR-208ENST00000558518 PARVGQ9HBI0 331 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 UBN1Q9NPG3 1134 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 DDX4Q9NQI0 724 aaKnown RBP12.12□□□□□ -0.47
LDLR-208ENST00000558518 NAALADL1Q9UQQ1 740 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 GLI3P10071 1580 aa12.12□□□□□ -0.47
LDLR-208ENST00000558518 BANF1O75531 89 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RARGP13631 454 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 POU5F1Q01860 360 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 FAM98CQ17RN3 349 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 COBLL1Q53SF7 1204 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 ZNF483Q8TF39 744 aaPredicted RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 CRAMP1Q96RY5 1269 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 CCDC77Q9BR77 488 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 KIAA1683Q9H0B3 1180 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 DNAJC18Q9H819 358 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 TCEAL9Q9UHQ7 104 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 NUDT17P0C025 328 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 MAPK4P31152 587 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RRP1BQ14684 758 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 RINT1Q6NUQ1 792 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 C1orf131Q8NDD1 294 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 LRRC8CQ8TDW0 803 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 CPA5Q8WXQ8 436 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 L3MBTL3Q96JM7 780 aaPredicted RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 DDX50Q9BQ39 737 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 PHRF1Q9P1Y6 1649 aaKnown RBP12.11□□□□□ -0.47
LDLR-208ENST00000558518 ARHGEF35A5YM69 484 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 SPATA31C1P0DKV0 1188 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 CETPP11597 493 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RFC5P40937 340 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 PSMC4P43686 418 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RWDD2BP57060 319 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 DYNLT1P63172 113 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 IL9RQ01113 521 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 VSTM1Q6UX27 236 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 ARHGEF18Q6ZSZ5 1173 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 SLFN11Q7Z7L1 901 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 SLFN12Q8IYM2 578 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 CCHCR1Q8TD31 782 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RUNDC3BQ96NL0 473 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 RPS6KC1Q96S38 1066 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 CBWD1Q9BRT8 395 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 C10orf88Q9H8K7 445 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 EBF2Q9HAK2 575 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 ZFATQ9P243 1243 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 USP20Q9Y2K6 914 aa12.11□□□□□ -0.47
LDLR-208ENST00000558518 C2orf71A6NGG8 1288 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 MSH4O15457 936 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 GAS7O60861 476 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 RTN2O75298 545 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 BAG2O95816 211 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 GSTA1P08263 222 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZSCAN5DPP0CG00 497 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 BMP3P12645 472 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 PRKCIP41743 596 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ABL2P42684 1182 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 PTGIRP43119 386 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 NFIAQ12857 509 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 SMAD1Q15797 465 aaKnown RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 LRRC36Q1X8D7 754 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 RNF220Q5VTB9 566 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 SYT2Q8N9I0 419 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 RNF217Q8TC41 542 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 MCUR1Q96AQ8 359 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 PCDHAC2Q9Y5I4 1007 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 GAS8O95995 478 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 UBTFL6P0CB48 400 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 FOXN2P32314 431 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 TUBP50607 506 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 SLC8A3P57103 927 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 NOP14P78316 857 aaKnown RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 RCN2Q14257 317 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZNF268Q14587 947 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms