RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 ZBTB33Q86T24 672 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 CMTR2Q8IYT2 770 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 HELQQ8TDG4 1101 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 PGBD4Q96DM1 585 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 CCDC34Q96HJ3 373 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 TMEM117Q9H0C3 514 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 RNF39Q9H2S5 420 aa16.28■□□□□ 0.2
VIPAS39-210ENST00000557466 ZMYM2Q9UBW7 1377 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 ANK1P16157 1881 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 LINC01553A4QN01 128 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 TBKBP1A7MCY6 615 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 TISP43B9A030 160 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 EIF3DO15371 548 aaKnown RBP eCLIP16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 TOM1L1O75674 476 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 HARSP12081 509 aaKnown RBP16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 ITGA4P13612 1032 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 TAP1Q03518 808 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 BTG3Q14201 252 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 PPP2R2DQ66LE6 453 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 EPM2AIP1Q7L775 607 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 CEP120Q8N960 986 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 KIAA0895Q8NCT3 520 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 ERCC4Q92889 916 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 CASD1Q96PB1 797 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 ACCSQ96QU6 501 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 HAPLN2Q9GZV7 340 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 RSAD1Q9HA92 442 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 SLC39A2Q9NP94 309 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 HCSTQ9UBK5 93 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 PCDHB13Q9Y5F0 798 aa16.27■□□□□ 0.2
VIPAS39-210ENST00000557466 UBE4BO95155 1302 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 ANKRD63C9JTQ0 380 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 MCF2P10911 925 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 AKAP5P24588 427 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 MCL1Q07820 350 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 NOLC1Q14978 699 aaKnown RBP eCLIP16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 GLB1LQ6UWU2 654 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 STXBP4Q6ZWJ1 553 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 APBB1IPQ7Z5R6 666 aaPredicted RBP16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 HACE1Q8IYU2 909 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 ABI1Q8IZP0 508 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 TCHPQ9BT92 498 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 SLC28A3Q9HAS3 691 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 SNTG2Q9NY99 539 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 EXOC7Q9UPT5 735 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 INPP5FQ9Y2H2 1132 aa16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 MRPL42Q9Y6G3 142 aaKnown RBP16.26■□□□□ 0.19
VIPAS39-210ENST00000557466 GOLGA6L22H0YM25 854 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 CLDN3O15551 220 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 OFD1O75665 1012 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 RECQL4O94761 1208 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 RHOBTB3O94955 611 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 LINC00271P0C7V0 271 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 HOXD13P35453 343 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 MLH1P40692 756 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 GRM5P41594 1212 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 MATR3P43243 847 aaKnown RBP eCLIP16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 STK4Q13043 487 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 KCNB1Q14721 858 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 TMEM192Q8IY95 271 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 ELOA2Q8IYF1 753 aaPredicted RBP16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 LRRC43Q8N309 656 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 FIBCD1Q8N539 461 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 SCFD1Q8WVM8 642 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 CCDC47Q96A33 483 aaKnown RBP16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 TTYH1Q9H313 450 aaPredicted RBP16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 PARP2Q9UGN5 583 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 HOOK1Q9UJC3 728 aaKnown RBP16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 GDAQ9Y2T3 454 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 PLXNA4Q9HCM2 1894 aa16.25■□□□□ 0.19
VIPAS39-210ENST00000557466 ATG2AQ2TAZ0 1938 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 TMEM265A0A087WTH1 108 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 INPPL1O15357 1258 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 AFF1P51825 1210 aaKnown RBP16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 OSTNP61366 133 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 PSMD2Q13200 908 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 BMT2Q1RMZ1 405 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 SEZ6Q53EL9 994 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 NOMO2Q5JPE7 1267 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 ZNF697Q5TEC3 545 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 LRRC55Q6ZSA7 311 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 NELFCDQ8IXH7 590 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 THNSL1Q8IYQ7 743 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 SYCP3Q8IZU3 236 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 ZNF507Q8TCN5 953 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 ZFP42Q96MM3 310 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 GAD1Q99259 594 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 ZNF576Q9H609 170 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 TMEM206Q9H813 350 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 KLK14Q9P0G3 267 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 GIT1Q9Y2X7 761 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 PCDHA5Q9Y5H7 936 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 STYXL1Q9Y6J8 313 aa16.24■□□□□ 0.19
VIPAS39-210ENST00000557466 A0A0B4J269 797 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 ARL5CA6NH57 179 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 FAM189A1O60320 539 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 ADSSP30520 456 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 ZBTB41Q5SVQ8 909 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 GPR153Q6NV75 609 aa16.23■□□□□ 0.19
VIPAS39-210ENST00000557466 SPATA20Q8TB22 786 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms