RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 NMRK2Q9NPI5 230 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 ERAP1Q9NZ08 941 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 DNAJC12Q9UKB3 198 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 COQ4Q9Y3A0 265 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 JRKLQ9Y4A0 524 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 COL1A2P08123 1366 aa13.69□□□□□ -0.22
SHMT2-229ENST00000557348 IGKV6-21A0A0C4DH24 114 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 VGLL3A8MV65 326 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ANKRD63C9JTQ0 380 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ZNF263O14978 683 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 SORBS3O60504 671 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 PPFIA4O75335 1185 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ADSSP30520 456 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 INHBEP58166 350 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 CYP27A1Q02318 531 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 CYP24A1Q07973 514 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ENOSF1Q7L5Y1 443 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 GPR142Q7Z601 462 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 DPP9Q86TI2 863 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 LRRN4CLQ8ND94 238 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 PPTC7Q8NI37 304 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 CALR3Q96L12 384 aaKnown RBP13.68□□□□□ -0.22
SHMT2-229ENST00000557348 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.68□□□□□ -0.22
SHMT2-229ENST00000557348 IKZF4Q9H2S9 585 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 MYH9P35579 1960 aaKnown RBP13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ADGRA3Q8IWK6 1321 aa13.68□□□□□ -0.22
SHMT2-229ENST00000557348 ZNF236Q9UL36 1845 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 A0A087WUV0 522 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 FANCGO15287 622 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 MAGEB2O15479 319 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 CLSTN1O94985 981 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 AP3M2P53677 418 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 GFPT1Q06210 699 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 POU5F1BQ06416 359 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 CKAP4Q07065 602 aaKnown RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 NAB2Q15742 525 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 HSDL1Q3SXM5 330 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 PAPD7Q5XG87 772 aaKnown RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 CDCA2Q69YH5 1023 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 FBXL13Q8NEE6 735 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 ASAP3Q8TDY4 903 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 TMEM143Q96AN5 459 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 KIFC3Q9BVG8 833 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 IRX2Q9BZI1 471 aaPredicted RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 LACRTQ9GZZ8 138 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 ABHD16BQ9H3Z7 469 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 TRPC6Q9Y210 931 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 WDR81Q562E7 1941 aa13.67□□□□□ -0.22
SHMT2-229ENST00000557348 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
SHMT2-229ENST00000557348 SEC31AO94979 1220 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 HOXC6P09630 235 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 PRLRP16471 622 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 GPC3P51654 580 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 MFAP3P55082 362 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 CLDN10P78369 228 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 DRAP1Q14919 205 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 PSMD6Q15008 389 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 PLCB4Q15147 1175 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SURF1Q15526 300 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 CHADLQ6NUI6 762 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SLC39A4Q6P5W5 647 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TAS1R3Q7RTX0 852 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SPATS2Q86XZ4 545 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 CBWD2Q8IUF1 395 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 C10orf67Q8IYJ2 551 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 LMO3Q8TAP4 145 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 FNBP1Q96RU3 617 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 MYCBPQ99417 103 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 NCAPGQ9BPX3 1015 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 MRPL4Q9BYD3 311 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 ADAMTS1Q9UHI8 967 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 AGO2Q9UKV8 859 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TELO2Q9Y4R8 837 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SAR1BQ9Y6B6 198 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 A0A0A6YYK5 440 aaPredicted RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TARSL2A2RTX5 802 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TISP43B9A030 160 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 EVI5O60447 810 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 ADRB2P07550 413 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 GCLMP48507 274 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SOX10P56693 466 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 HUNKP57058 714 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 ARID5AQ03989 594 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 PTK2Q05397 1052 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 ARHGAP1Q07960 439 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 PPP3CAQ08209 521 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 GRM1Q13255 1194 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 KIF22Q14807 665 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 DNAJC21Q5F1R6 531 aaKnown RBP13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TAPT1Q6NXT6 567 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 SAAL1Q96ER3 474 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 NT5C1BQ96P26 610 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 NFKBIZQ9BYH8 718 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 TMEM117Q9H0C3 514 aa13.66□□□□□ -0.22
SHMT2-229ENST00000557348 A0A087X0T9 212 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 A0A0U1RQJ8 604 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 MACROD2A1Z1Q3 448 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 RCCD1A6NED2 376 aa13.65□□□□□ -0.22
SHMT2-229ENST00000557348 LRRIQ3A6PVS8 624 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms