RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 MRPL44Q9H9J2 332 aaKnown RBP14.91□□□□□ -0.02
SHMT2-228ENST00000557302 AAASQ9NRG9 546 aa14.91□□□□□ -0.02
SHMT2-228ENST00000557302 OLFML3Q9NRN5 406 aa14.91□□□□□ -0.02
SHMT2-228ENST00000557302 TBX20Q9UMR3 447 aa14.91□□□□□ -0.02
SHMT2-228ENST00000557302 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-228ENST00000557302 RFXAPO00287 272 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 TOM1L1O75674 476 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 RB1P06400 928 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 FOSL2P15408 326 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 LAG3P18627 525 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 AFMP43652 599 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 COASYQ13057 564 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 MPZL3Q6UWV2 235 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 LRRC55Q6ZSA7 311 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 ZNF720Q7Z2F6 126 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 MAP4K3Q8IVH8 894 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 GDPD5Q8WTR4 605 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 HVCN1Q96D96 273 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 PAGE5Q96GU1 130 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 C11orf84Q9BUA3 381 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-228ENST00000557302 PLVAPQ9BX97 442 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 CDT1Q9H211 546 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 CWH43Q9H720 699 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 PTPRHQ9HD43 1115 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 TBC1D7Q9P0N9 293 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 KANSL3Q9P2N6 904 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 HCSTQ9UBK5 93 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 PARP2Q9UGN5 583 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 GIT1Q9Y2X7 761 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 PCDHB12Q9Y5F1 795 aa14.9□□□□□ -0.02
SHMT2-228ENST00000557302 ZMYM2Q9UBW7 1377 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 ARL5CA6NH57 179 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 C5orf67F2Z3F1 127 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 HNRNPDLO14979 420 aaKnown RBP14.89□□□□□ -0.03
SHMT2-228ENST00000557302 MCF2P10911 925 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 PROZP22891 400 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 AKAP5P24588 427 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 MLH1P40692 756 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 LIG4P49917 911 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 RNASELQ05823 741 aaKnown RBP14.89□□□□□ -0.03
SHMT2-228ENST00000557302 GPM6BQ13491 265 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 ALCAMQ13740 583 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 ZC2HC1CQ53FD0 456 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-228ENST00000557302 ZBTB33Q86T24 672 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 GRAMD1CQ8IYS0 662 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 GAD1Q99259 594 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 BLZF1Q9H2G9 400 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 TBC1D13Q9NVG8 400 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 SNTG2Q9NY99 539 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 ANKFY1Q9P2R3 1169 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 TRANK1O15050 2925 aa14.89□□□□□ -0.03
SHMT2-228ENST00000557302 FNDC1Q4ZHG4 1894 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-228ENST00000557302 H3BNC9 293 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 INPPL1O15357 1258 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 CLDN3O15551 220 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 GTPBP6O43824 516 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ABCB7O75027 752 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 PPP1R37O75864 691 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 RECQL4O94761 1208 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ZNF202O95125 648 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 GCNT3O95395 438 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 POMCP01189 267 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 PIGRP01833 764 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 HARSP12081 509 aaKnown RBP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 IGFBP4P22692 258 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 CASP1P29466 404 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 MATR3P43243 847 aaKnown RBP eCLIP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 CUL4BQ13620 913 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ADGRE1Q14246 886 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 NOLC1Q14978 699 aaKnown RBP eCLIP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 KRBA2Q6ZNG9 492 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 UNC13DQ70J99 1090 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 COLGALT1Q8NBJ5 622 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 P2RX5Q93086 422 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ZBTB45Q96K62 511 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ZFP42Q96MM3 310 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 ZNF558Q96NG5 402 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 CCDC94Q9BW85 323 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-228ENST00000557302 STXBP5LQ9Y2K9 1186 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 GDAQ9Y2T3 454 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 PCDHB13Q9Y5F0 798 aa14.88□□□□□ -0.03
SHMT2-228ENST00000557302 PVALEFA0A1B0GWK0 134 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 CARNS1A5YM72 827 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 ABLIM1O14639 778 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 LPXNO60711 386 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 ZC3H11AO75152 810 aaKnown RBP eCLIP14.87□□□□□ -0.03
SHMT2-228ENST00000557302 MYL1P05976 194 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 MYBP10242 640 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 GRM5P41594 1212 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 SCNN1GP51170 649 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 AFF1P51825 1210 aaKnown RBP14.87□□□□□ -0.03
SHMT2-228ENST00000557302 MCL1Q07820 350 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 FAM26FQ5R3K3 315 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 L1TD1Q5T7N2 865 aaKnown RBP14.87□□□□□ -0.03
SHMT2-228ENST00000557302 KCNT2Q6UVM3 1135 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 STXBP4Q6ZWJ1 553 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 THNSL1Q8IYQ7 743 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 KLHL23Q8NBE8 558 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 CCDC34Q96HJ3 373 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 FAM193BQ96PV7 902 aaPredicted RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms