RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 SMTNL1A8MU46 457 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 CLIC2O15247 247 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 OGTO15294 1046 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 NR3C1P04150 777 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 ACTN1P12814 892 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 ZNF165P49910 485 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 PMS1P54277 932 aaKnown RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 STX17P56962 302 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 FAM189BP81408 668 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 NOLC1Q14978 699 aaKnown RBP eCLIP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 UBXN11Q5T124 520 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 SPATA1Q5VX52 437 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 EEF1DP3Q658K8 133 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 C11orf57Q6ZUT1 292 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 MRPL10Q7Z7H8 261 aaKnown RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 ZBTB33Q86T24 672 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 RTN4RL1Q86UN2 441 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 HACE1Q8IYU2 909 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 XXYLT1Q8NBI6 393 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 NOC3LQ8WTT2 800 aaKnown RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 VWCEQ96DN2 955 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 CEP63Q96MT8 703 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 DUSP9Q99956 384 aaKnown RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 CBWD1Q9BRT8 395 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 TRIM6Q9C030 488 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 CDT1Q9H211 546 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 IKZF4Q9H2S9 585 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 HSPBP1Q9NZL4 362 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 ANKFY1Q9P2R3 1169 aa13.61□□□□□ -0.23
SHMT2-221ENST00000555773 AGO2Q9UKV8 859 aaKnown RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 ZMYND8Q9ULU4 1186 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-221ENST00000555773 TISP43B9A030 160 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 C9IYK1 514 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 IKBKBO14920 756 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 EXTL3O43909 919 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 MGEA5O60502 916 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 EXOC3O60645 756 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 BAIAP3O94812 1187 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 NPTXRO95502 500 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 EOMESO95936 686 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 FGBP02675 491 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 CLTAP09496 248 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 SYN1P17600 705 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 NR2F2P24468 414 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 TPD52L1Q16890 204 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-221ENST00000555773 FILIP1Q7Z7B0 1213 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 CDR2LQ86X02 465 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-221ENST00000555773 ZC3H3Q8IXZ2 948 aaKnown RBP13.6□□□□□ -0.23
SHMT2-221ENST00000555773 GPD1LQ8N335 351 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 CSGALNACT2Q8N6G5 542 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 PGBD4Q96DM1 585 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 FBXL18Q96ME1 805 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 MED15Q96RN5 788 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 HAPLN2Q9GZV7 340 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 PCIF1Q9H4Z3 704 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 FAM105AQ9NUU6 356 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 FRMD4BQ9Y2L6 1034 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 PCDHB2Q9Y5E7 798 aa13.6□□□□□ -0.23
SHMT2-221ENST00000555773 TRIM49BA6NDI0 452 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 ZNF233A6NK53 670 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 MAPK13O15264 365 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 GNA14O95837 355 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 PSMC2P35998 433 aaKnown RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 GRM5P41594 1212 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 CYP2J2P51589 502 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 MYL5Q02045 173 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 PSRC1Q6PGN9 363 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 C16orf59Q7L2K0 433 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 THNSL1Q8IYQ7 743 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 FAM200AQ8TCP9 573 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 ACAP3Q96P50 834 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 MKNK1Q9BUB5 465 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 CCDC94Q9BW85 323 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 SRRTQ9BXP5 876 aaKnown RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 EIF2AQ9BY44 585 aaKnown RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 ELAC1Q9H777 363 aaKnown RBP13.59□□□□□ -0.23
SHMT2-221ENST00000555773 PLEKHA5Q9HAU0 1116 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 UBN1Q9NPG3 1134 aa13.59□□□□□ -0.23
SHMT2-221ENST00000555773 MYH11P35749 1972 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 BECN2A8MW95 431 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 SLC16A3O15427 465 aaKnown RBP13.58□□□□□ -0.24
SHMT2-221ENST00000555773 FAM189A1O60320 539 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 STAG3L1P0CL83 205 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 ACRP10323 421 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 YARSP54577 528 aaKnown RBP13.58□□□□□ -0.24
SHMT2-221ENST00000555773 IQCB1Q15051 598 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 LRRC55Q6ZSA7 311 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 ZNF365Q70YC5 407 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 ECHDC2Q86YB7 292 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 CD302Q8IX05 232 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 SMG8Q8ND04 991 aaKnown RBP13.58□□□□□ -0.24
SHMT2-221ENST00000555773 RSPH1Q8WYR4 309 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 FAM213AQ9BRX8 229 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 THAP9Q9H5L6 903 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 METTL14Q9HCE5 456 aaKnown RBP13.58□□□□□ -0.24
SHMT2-221ENST00000555773 CPSF3Q9UKF6 684 aaKnown RBP13.58□□□□□ -0.24
SHMT2-221ENST00000555773 NFE2L3Q9Y4A8 694 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 IPPQ9Y573 584 aa13.58□□□□□ -0.24
SHMT2-221ENST00000555773 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-221ENST00000555773 AKAP3O75969 853 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms