RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 AFF1P51825 1210 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 GSDMDP57764 484 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 TARBP2Q15633 366 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CAMK4Q16566 473 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 LRCH2Q5VUJ6 765 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CPLX2Q6PUV4 134 aaKnown RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 KSR1Q8IVT5 923 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 FMR1NBQ8N0W7 255 aaPredicted RBP12.68□□□□□ -0.38
VPS33B-204ENST00000554660 ZNF710Q8N1W2 664 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 DTWD2Q8NBA8 298 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 LINC00301Q8NCQ3 95 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 RSAD2Q8WXG1 361 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 PHKBQ93100 1093 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 NLRP4Q96MN2 994 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 KLHL5Q96PQ7 755 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 TEKT3Q9BXF9 490 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 CHST12Q9NRB3 414 aa12.68□□□□□ -0.38
VPS33B-204ENST00000554660 C2CD2LO14523 706 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 DDHD2O94830 711 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 JAK3P52333 1124 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 LETM2Q2VYF4 491 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 CATSPER4Q7RTX7 472 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 PPFIBP1Q86W92 1011 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 RHPN2Q8IUC4 686 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 PIAS4Q8N2W9 510 aaPredicted RBP12.67□□□□□ -0.38
VPS33B-204ENST00000554660 CCDC12Q8WUD4 166 aaPredicted RBP12.67□□□□□ -0.38
VPS33B-204ENST00000554660 C8orf76Q96K31 380 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 CEP89Q96ST8 783 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 TRAIPQ9BWF2 469 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 EMILIN2Q9BXX0 1053 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 DNAJC25Q9H1X3 360 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 MAN1C1Q9NR34 630 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 PYCARDQ9ULZ3 195 aa12.67□□□□□ -0.38
VPS33B-204ENST00000554660 MORC2Q9Y6X9 1032 aaPredicted RBP12.67□□□□□ -0.38
VPS33B-204ENST00000554660 KRBA1A5PL33 1030 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 SMTNL1A8MU46 457 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 PPP6R2O75170 966 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 STBD1O95210 358 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 SKIP12755 728 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 GNA11P29992 359 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 SFNP31947 248 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 RAB27AP51159 221 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 PLCB2Q00722 1185 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 PLA2G4FQ68DD2 849 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 AGMOQ6ZNB7 445 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 C15orf39Q6ZRI6 1047 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 CCDC186Q7Z3E2 898 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 MIER3Q7Z3K6 550 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 ZNF410Q86VK4 478 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 FSIP1Q8NA03 581 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 URGCPQ8TCY9 931 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 RIN2Q8WYP3 895 aaPredicted RBP12.66□□□□□ -0.38
VPS33B-204ENST00000554660 RSPH1Q8WYR4 309 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 SLC5A5Q92911 643 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 ZNF830Q96NB3 372 aaPredicted RBP12.66□□□□□ -0.38
VPS33B-204ENST00000554660 RIT2Q99578 217 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 RTP3Q9BQQ7 232 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 VPS54Q9P1Q0 977 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 SUCLA2Q9P2R7 463 aaPredicted RBP12.66□□□□□ -0.38
VPS33B-204ENST00000554660 CA14Q9ULX7 337 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 PCDHB2Q9Y5E7 798 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 R4GN57 208 aa12.66□□□□□ -0.38
VPS33B-204ENST00000554660 FRYLO94915 3013 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 IGKV6-21A0A0C4DH24 114 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 BECN2A8MW95 431 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 STK25O00506 426 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 TDP2O95551 362 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 POMCP01189 267 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 PRKCSHP14314 528 aaPredicted RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 RFX1P22670 979 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 CMA1P23946 247 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 GBP2P32456 591 aaPredicted RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 ME1P48163 572 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 DNM2P50570 870 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 TPM4P67936 248 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 STK38Q15208 465 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 XKR3Q5GH77 459 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 RMDN1Q96DB5 314 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 NIFKQ9BYG3 293 aaKnown RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 GOLPH3LQ9H4A5 285 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 RSAD1Q9HA92 442 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 MRPL17Q9NRX2 175 aaKnown RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 AGPAT5Q9NUQ2 364 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 MARCH5Q9NX47 278 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 FAM13BQ9NYF5 915 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 ORC3Q9UBD5 711 aaPredicted RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 PCDHA7Q9UN72 937 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 PRG3Q9Y2Y8 225 aaPredicted RBP12.65□□□□□ -0.38
VPS33B-204ENST00000554660 CACNA1AO00555 2505 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 WDR87Q6ZQQ6 2873 aa12.65□□□□□ -0.38
VPS33B-204ENST00000554660 CLUHO75153 1309 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CCDC196A0A1B0GTZ2 297 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 MED19A0JLT2 244 aaPredicted RBP12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CARNS1A5YM72 827 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 NRP1O14786 923 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 CPLX1O14810 134 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 IKBKBO14920 756 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 SPTLC2O15270 562 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 TEX28O15482 410 aa12.64□□□□□ -0.39
VPS33B-204ENST00000554660 PRPF3O43395 683 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms