RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 ECHDC2Q86YB7 292 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 SMG8Q8ND04 991 aaKnown RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 TET1Q8NFU7 2136 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 POMGNT1Q8WZA1 660 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 DHTKD1Q96HY7 919 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 CBWD1Q9BRT8 395 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 MSTO1Q9BUK6 570 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 MTIF3Q9H2K0 278 aaKnown RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 CGNQ9P2M7 1197 aaKnown RBP13.38□□□□□ -0.27
SHMT2-209ENST00000553949 IPPQ9Y573 584 aa13.38□□□□□ -0.27
SHMT2-209ENST00000553949 SYCE3A1L190 88 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 CLIC2O15247 247 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 CALUO43852 315 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 ATF7P17544 494 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 GARTP22102 1010 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 BMP8BP34820 402 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 DEFB103AP81534 67 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 ZCWPW2Q504Y3 356 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 RASIP1Q5U651 963 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 CENPPQ6IPU0 288 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 KLHL10Q6JEL2 608 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 ARMCX5Q6P1M9 558 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 MRPL10Q7Z7H8 261 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 ZNF598Q86UK7 904 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 C12orf56Q8IXR9 622 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 THNSL1Q8IYQ7 743 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 HACE1Q8IYU2 909 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 CRIPAKQ8N1N5 446 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 RNF169Q8NCN4 708 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 P2RX5Q93086 422 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 RNPC3Q96LT9 517 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 NXF3Q9H4D5 531 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 ELAC1Q9H777 363 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 RNF216Q9NWF9 866 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 TMEM161AQ9NX61 479 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 DACH1Q9UI36 760 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 AGO2Q9UKV8 859 aaKnown RBP13.37□□□□□ -0.27
SHMT2-209ENST00000553949 CTNND2Q9UQB3 1225 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 TRAF3IP3Q9Y228 551 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 HES2Q9Y543 173 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 PCDHB7Q9Y5E2 793 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 SLC4A7Q9Y6M7 1214 aa13.37□□□□□ -0.27
SHMT2-209ENST00000553949 KIAA0391O15091 583 aaKnown RBP13.36□□□□□ -0.27
SHMT2-209ENST00000553949 OGTO15294 1046 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 FAM189A1O60320 539 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 EOMESO95936 686 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 CCNE1P24864 410 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 GRM5P41594 1212 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 PMS1P54277 932 aaKnown RBP13.36□□□□□ -0.27
SHMT2-209ENST00000553949 TYRO3Q06418 890 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 PAK1Q13153 545 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 STX1AQ16623 288 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 SEZ6Q53EL9 994 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 NPAS4Q8IUM7 802 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 CEP120Q8N960 986 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 TMEM174Q8WUU8 243 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 NELFBQ8WX92 580 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 LPPQ93052 612 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 TOP1MTQ969P6 601 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 PGBD4Q96DM1 585 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 TSG101Q99816 390 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 APOL6Q9BWW8 343 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 RNF39Q9H2S5 420 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 PCIF1Q9H4Z3 704 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 ANO10Q9NW15 660 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 SNTG2Q9NY99 539 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 HSPBP1Q9NZL4 362 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 LRFN2Q9ULH4 789 aa13.36□□□□□ -0.27
SHMT2-209ENST00000553949 BICDL2A1A5D9 508 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 TRIM49BA6NDI0 452 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 MEIS3P2A8K0S8 358 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 EXTL3O43909 919 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 UPP2O95045 317 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 NR3C1P04150 777 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 STAG3L1P0CL83 205 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 CCDC192P0DO97 292 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 ITGA4P13612 1032 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 AKAP5P24588 427 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 CYP2J2P51589 502 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 OSTNP61366 133 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 LRRC63Q05C16 580 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 MYBPC2Q14324 1141 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 NFIL3Q16649 462 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 KYAT1Q16773 422 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 EDRF1Q3B7T1 1238 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 ZBTB41Q5SVQ8 909 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 ANKRD40Q6AI12 368 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 CHRDL2Q6WN34 429 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 AGMOQ6ZNB7 445 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 TMCO2Q7Z6W1 182 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-209ENST00000553949 SLC9A9Q8IVB4 645 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 ZSWIM2Q8NEG5 633 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 PHOSPHO2Q8TCD6 241 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 SAAL1Q96ER3 474 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 ACAP3Q96P50 834 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 SLC9A7Q96T83 725 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 FAM213AQ9BRX8 229 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 CCDC94Q9BW85 323 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-209ENST00000553949 PRO3102Q9H379 93 aa13.35□□□□□ -0.27
SHMT2-209ENST00000553949 DMAC2Q9NW81 257 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms