RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 SNCAIPQ9Y6H5 919 aa6.57□□□□□ -1.36
VIPAS39-204ENST00000553576 LOC102724159A0A0B4J2E5 919 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 A0A0G2JLL6 359 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 UNCXA6NJT0 531 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 MEN1O00255 615 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 CLIC2O15247 247 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 AKR1B10O60218 316 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 EIF3JO75822 258 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 CCNE2O96020 404 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PSAPP07602 524 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PLEKP08567 350 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 TGFB3P10600 412 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 UCHL3P15374 230 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 SLC9A1P19634 815 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 MAGEA1P43355 309 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 FMO5P49326 533 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 CASP4P49662 377 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 JAM2P57087 298 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 POLR2FP61218 127 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 ITIH3Q06033 890 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PWP2Q15269 919 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 ELF2Q15723 593 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 STXBP2Q15833 593 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 SLC18A3Q16572 532 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 GNPTABQ3T906 1256 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 ZC2HC1CQ53FD0 456 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PRAMEF18Q5VWM3 479 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 ABHD15Q6UXT9 468 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 USP50Q70EL3 339 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 ZNF572Q7Z3I7 529 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PRRT2Q7Z6L0 340 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 FAM186BQ8IYM0 893 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 MSANTD4Q8NCY6 345 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 LRRN4CLQ8ND94 238 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 TRIM58Q8NG06 486 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 UBE2Q2Q8WVN8 375 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 EDARADDQ8WWZ3 215 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 DCPSQ96C86 337 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 RPGRIP1Q96KN7 1286 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 STK33Q9BYT3 514 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 IFIH1Q9BYX4 1025 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 SIX2Q9NPC8 291 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 LUC7LQ9NQ29 371 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 A1CFQ9NQ94 594 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 HOMER2Q9NSB8 354 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 DDX41Q9UJV9 622 aaKnown RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 GDF2Q9UK05 429 aaPredicted RBP6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 RAB21Q9UL25 225 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 INTUQ9ULD6 942 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 NENFQ9UMX5 172 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 KCNH4Q9UQ05 1017 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 FRMD4BQ9Y2L6 1034 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 SAMM50Q9Y512 469 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 LRRC37A2A6NM11 1700 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 PLXNA1Q9UIW2 1896 aa6.56□□□□□ -1.36
VIPAS39-204ENST00000553576 MCM3APO60318 1980 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 IGKV6D-21A0A0A0MT36 114 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 DDX39AO00148 427 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 N4BP1O75113 896 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 TACC1O75410 805 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 DDNO94850 711 aaPredicted RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 ZRANB2O95218 330 aaKnown RBP eCLIP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 SLC25A27O95847 323 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 RFX1P22670 979 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 EDNRBP24530 442 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 COPB2P35606 906 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 CHRNA4P43681 627 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 IREB2P48200 963 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 SMTNP53814 917 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 CHMP4BP1P59074 171 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 CYP27A1Q02318 531 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 KLHL30Q0D2K2 578 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 VGLL4Q14135 290 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 NAB2Q15742 525 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 FBXO38Q6PIJ6 1188 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 INTS8Q75QN2 995 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 ANO5Q75V66 913 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 HAUS6Q7Z4H7 955 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 ERO1BQ86YB8 467 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 MSL3Q8N5Y2 521 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 TMEM161BQ8NDZ6 487 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 MCPH1Q8NEM0 835 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 LMO3Q8TAP4 145 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 HNRNPLLQ8WVV9 542 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 GOLGA1Q92805 767 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 KIFAP3Q92845 792 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 ATP6V0A1Q93050 837 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 SECISBP2LQ93073 1101 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 FBXL18Q96ME1 805 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 CRACR2AQ9BSW2 395 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 CFHR5Q9BXR6 569 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 NIFKQ9BYG3 293 aaKnown RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 DEF6Q9H4E7 631 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 POLD4Q9HCU8 107 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 NLRC4Q9NPP4 1024 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 ARGLU1Q9NWB6 273 aaPredicted RBP6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 OGFRQ9NZT2 677 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 RNF14Q9UBS8 474 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 SLC9A2Q9UBY0 812 aa6.55□□□□□ -1.36
VIPAS39-204ENST00000553576 TCEAL9Q9UHQ7 104 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms