RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 VWCEQ96DN2 955 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 ZBTB10Q96DT7 871 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 SCLYQ96I15 445 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CHP1Q99653 195 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 HINFPQ9BQA5 517 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 LRRC1Q9BTT6 524 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 KATNAL1Q9BW62 490 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 CSRNP2Q9H175 543 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 WNT8AQ9H1J5 351 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 SETD4Q9NVD3 440 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 SCN5AQ14524 2016 aa8.3□□□□□ -1.08
LIMA1-216ENST00000552909 RNF225M0QZC1 329 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TREHO43280 583 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ACTN4O43707 911 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SKAP2O75563 359 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ATG7O95352 703 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 KRT14P02533 472 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SMIM10L2AP0DMW4 78 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SMIM10L2BP0DMW5 78 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ITIH3Q06033 890 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 KRT31Q15323 416 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SHHQ15465 462 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 IL17AQ16552 155 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TSR1Q2NL82 804 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ANKRD20A8PQ5CZ79 823 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 MFSD5Q6N075 450 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ABHD15Q6UXT9 468 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TAX1BP1Q86VP1 789 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 C3orf20Q8ND61 904 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 RASSF8Q8NHQ8 419 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 HDAC7Q8WUI4 952 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 GLG1Q92896 1179 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TATDN2Q93075 761 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SPDL1Q96EA4 605 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 CYFIP2Q96F07 1278 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 MBOAT7Q96N66 472 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SEZ6LQ9BYH1 1024 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TMEM60Q9H2L4 133 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 KIF9Q9HAQ2 790 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 LIMA1Q9UHB6 759 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 DMGDHQ9UI17 866 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SUPT20HL2P0C7V6 817 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ACRP10323 421 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 CD44P16070 742 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TNFRSF8P28908 595 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 RWDD2BP57060 319 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 PTPN11Q06124 597 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SPAG1Q07617 926 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 RBBP5Q15291 538 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 Q4G0T1 1027 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 USP49Q70CQ1 688 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 TRMT1LQ7Z2T5 733 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 CCDC60Q8IWA6 550 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF579Q8NAF0 562 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 OR8K1Q8NGG5 319 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 ETNPPLQ8TBG4 499 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 SAAL1Q96ER3 474 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 STIM2Q9P246 746 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 DDX25Q9UHL0 483 aaKnown RBP8.29□□□□□ -1.08
LIMA1-216ENST00000552909 NOD1Q9Y239 953 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 WDR81Q562E7 1941 aa8.29□□□□□ -1.08
LIMA1-216ENST00000552909 IGKV6D-21A0A0A0MT36 114 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 EME2A4GXA9 379 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 HMGB1P1B2RPK0 211 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CHMP2AO43633 222 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 MGRN1O60291 552 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 BUB1BO60566 1050 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 LGR5O75473 907 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 PSMD10O75832 226 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 IPO7O95373 1038 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ATP4AP20648 1035 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 HOXC8P31273 242 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 STAT5BP51692 787 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 VAV2P52735 878 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 COPB1P53618 953 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ADAM17P78536 824 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 FPGSQ05932 587 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 XRCC4Q13426 336 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 GPNMBQ14956 572 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 PPP4R3AQ6IN85 833 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SWSAP1Q6NVH7 229 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 DTHD1Q6ZMT9 781 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ZNF572Q7Z3I7 529 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 TDHQ8IZJ6 230 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ARFGAP2Q8N6H7 521 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CCDC26Q8TAB7 109 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 LMBR1Q8WVP7 490 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SLC5A5Q92911 643 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ATP6V0A1Q93050 837 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 EPSTI1Q96J88 318 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CCDC43Q96MW1 224 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 VPS16Q9H269 839 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SMARCAD1Q9H4L7 1026 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 POLD4Q9HCU8 107 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 HOMER3Q9NSC5 361 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 TBC1D22BQ9NU19 505 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ERAP1Q9NZ08 941 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 MYH9P35579 1960 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 REV3LO60673 3130 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 C17orf102A2RUQ5 167 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms