RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 LINC01553A4QN01 128 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 HNRNPDLO14979 420 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 TOM1L1O75674 476 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 PPP1R37O75864 691 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 PRPF6O94906 941 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 ARHGEF15O94989 841 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 RPN1P04843 607 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 MATR3P43243 847 aaKnown RBP eCLIP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 CASP5P51878 434 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 TAP1Q03518 808 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 EHHADHQ08426 723 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 DPYDQ12882 1025 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 POSTNQ15063 836 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 KMT5BQ4FZB7 885 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 CLLU1OSQ5K130 101 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 L1TD1Q5T7N2 865 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 GLB1LQ6UWU2 654 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 MPZL3Q6UWV2 235 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 CASD1Q96PB1 797 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 CDT1Q9H211 546 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 ZNF576Q9H609 170 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 RSAD1Q9HA92 442 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 ANKFY1Q9P2R3 1169 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 PARP2Q9UGN5 583 aa17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 HOOK1Q9UJC3 728 aaKnown RBP17.78■□□□□ 0.44
CHMP1A-209ENST00000550872 TMEM265A0A087WTH1 108 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 GOLGA6L22H0YM25 854 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 CLDN3O15551 220 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 OFD1O75665 1012 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 PIGRP01833 764 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 MCF2P10911 925 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 HARSP12081 509 aaKnown RBP17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 PROZP22891 400 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 AKAP5P24588 427 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 KCNA1Q09470 495 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 PNOCQ13519 176 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 ZNF697Q5TEC3 545 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 SYCP3Q8IZU3 236 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 GLIS3Q8NEA6 775 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 SLC39A2Q9NP94 309 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 UBN1Q9NPG3 1134 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 SNTG2Q9NY99 539 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 INPP5FQ9Y2H2 1132 aa17.77■□□□□ 0.44
CHMP1A-209ENST00000550872 UNC80Q8N2C7 3258 aa17.77■□□□□ 0.43
CHMP1A-209ENST00000550872 ANKRD63C9JTQ0 380 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 ABLIM1O14639 778 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 PSMD2Q13200 908 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 NOLC1Q14978 699 aaKnown RBP eCLIP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 NOMO2Q5JPE7 1267 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 SPOUT1Q5T280 376 aaKnown RBP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 THNSL1Q8IYQ7 743 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 TGS1Q96RS0 853 aaKnown RBP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 CCDC94Q9BW85 323 aaPredicted RBP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 TTYH1Q9H313 450 aaPredicted RBP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 TMEM206Q9H813 350 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 CERS4Q9HA82 394 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 LMBRD1Q9NUN5 540 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 GDAQ9Y2T3 454 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 GIT1Q9Y2X7 761 aa17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 MRPL42Q9Y6G3 142 aaKnown RBP17.76■□□□□ 0.43
CHMP1A-209ENST00000550872 FNDC1Q4ZHG4 1894 aaPredicted RBP17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 OSTNP61366 133 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 MCL1Q07820 350 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 SLFN12LQ6IEE8 588 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 SPRED2Q7Z698 418 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 ZNF507Q8TCN5 953 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 URGCPQ8TCY9 931 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 FAM161BQ96MY7 647 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 GAD1Q99259 594 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 MRPL9Q9BYD2 267 aaKnown RBP17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 IKZF4Q9H2S9 585 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 SEMA6BQ9H3T3 888 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 TYW1Q9NV66 732 aaKnown RBP17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 KLK14Q9P0G3 267 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 MTUS1Q9ULD2 1270 aa17.75■□□□□ 0.43
CHMP1A-209ENST00000550872 TISP43B9A030 160 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 EIF3DO15371 548 aaKnown RBP eCLIP17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 RHOBTB3O94955 611 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 SMC2O95347 1197 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 MLH1P40692 756 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 GRM5P41594 1212 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 ERVK-21P61565 698 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 RNASELQ05823 741 aaKnown RBP17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 STK4Q13043 487 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 SLC39A4Q6P5W5 647 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 EPM2AIP1Q7L775 607 aaPredicted RBP17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 ELOA2Q8IYF1 753 aaPredicted RBP17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 LRRC43Q8N309 656 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 CEP120Q8N960 986 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 ARNTL2Q8WYA1 636 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 RSPH1Q8WYR4 309 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 C17orf80Q9BSJ5 609 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 HAPLN2Q9GZV7 340 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 KANSL3Q9P2N6 904 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 COL4A6Q14031 1691 aa17.74■□□□□ 0.43
CHMP1A-209ENST00000550872 ARL5CA6NH57 179 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 RECQL4O94761 1208 aa17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 AFF1P51825 1210 aaKnown RBP17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 YARSP54577 528 aaKnown RBP17.73■□□□□ 0.43
CHMP1A-209ENST00000550872 KCNB1Q14721 858 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms