RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 PDCD2LQ9BRP1 358 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 LRRC27Q9C0I9 530 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 FAM49AQ9H0Q0 323 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 POMKQ9H5K3 350 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 ENTPD7Q9NQZ7 604 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 DDX25Q9UHL0 483 aaKnown RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 FBXL21Q9UKT6 434 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 LRFN2Q9ULH4 789 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 TRIP12Q14669 1992 aaPredicted RBP7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 ZFYVE26Q68DK2 2539 aa7.89□□□□□ -1.15
DEPDC4-208ENST00000549341 KDM3AQ9Y4C1 1321 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TBKBP1A7MCY6 615 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TBX3O15119 743 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 HOXA2O43364 376 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 PPP1R11O60927 126 aaPredicted RBP7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 FGF18O76093 207 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 SLFN14P0C7P3 912 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 ARP10275 920 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 MARK3P27448 753 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 SREBF1P36956 1147 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 STAT6P42226 847 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 NLRP12P59046 1061 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 PPFIA1Q13136 1202 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 PAK2Q13177 524 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 PDIA5Q14554 519 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 POSTNQ15063 836 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 ST3GAL2Q16842 350 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 CT47A1Q5JQC4 288 aaPredicted RBP7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 FAM26DQ5JW98 314 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 FBXO47Q5MNV8 452 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 KRT79Q5XKE5 535 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 MRPL14Q6P1L8 145 aaKnown RBP7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TAF2Q6P1X5 1199 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 GAS2L3Q86XJ1 694 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 CCDC105Q8IYK2 499 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 ERMNQ8TAM6 284 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 DHX58Q96C10 678 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 ZBTB10Q96DT7 871 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TRIM44Q96DX7 344 aaPredicted RBP7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 FAM20AQ96MK3 541 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TCF25Q9BQ70 676 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 CCSER1Q9C0I3 900 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 RBSNQ9H1K0 784 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 S1PR5Q9H228 398 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 BCAS3Q9H6U6 928 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 RMND1Q9NWS8 449 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 TMEM260Q9NX78 707 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 PCDHB12Q9Y5F1 795 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 CDY2AQ9Y6F7 541 aa7.88□□□□□ -1.15
DEPDC4-208ENST00000549341 OTOGLQ3ZCN5 2332 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CYP3A7-CYP3A51PA0A087WV96 503 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 HIDE1A8MVS5 230 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 PI15O43692 258 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 STAG3L1P0CL83 205 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 XRCC6P12956 609 aaKnown RBP eCLIP7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CYP3A7P24462 503 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CCND2P30279 289 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 TXKP42681 527 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 ZNF165P49910 485 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CLCN5P51795 746 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 ERVFC1P60507 584 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 SH3BP2P78314 561 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 IGBP1P78318 339 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 SETQ01105 290 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 MGAT3Q09327 533 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 TMEM62Q0P6H9 643 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 PGM5Q15124 567 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 RSPO4Q2I0M5 234 aaPredicted RBP7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 LONRF3Q496Y0 759 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 Q4G0T1 1027 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 ANO6Q4KMQ2 910 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 SPECC1Q5M775 1068 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 HAUS3Q68CZ6 603 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CES5AQ6NT32 575 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 KCNV1Q6PIU1 500 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 USP17L6PQ6QN14 398 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 METTL7BQ6UX53 244 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CYFIP1Q7L576 1253 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 CABP7Q86V35 215 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 RETREG3Q86VR2 466 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 FCHSD1Q86WN1 690 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 SIX5Q8N196 739 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 KCTD17Q8N5Z5 321 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 C4orf32Q8N8J7 132 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 DTWD2Q8NBA8 298 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 RNF214Q8ND24 703 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 DNAJB3Q8WWF6 145 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 FUCA2Q9BTY2 467 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 NT5C3AQ9H0P0 336 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 AGO3Q9H9G7 860 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 LIMD1Q9UGP4 676 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 TCEAL9Q9UHQ7 104 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 SERTAD1Q9UHV2 236 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 TUBE1Q9UJT0 475 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 RALYQ9UKM9 306 aaKnown RBP7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 PCDHA12Q9UN75 941 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 TELO2Q9Y4R8 837 aa7.87□□□□□ -1.15
DEPDC4-208ENST00000549341 NRCAMQ92823 1304 aa7.86□□□□□ -1.15
DEPDC4-208ENST00000549341 M0QZ92 97 aa7.86□□□□□ -1.15
DEPDC4-208ENST00000549341 MEIS2O14770 477 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms