RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NOP56O00567 594 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ENC1O14682 589 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 HMMRO75330 724 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 PAGE1O75459 146 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ZFYP08048 801 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 SRGAP2BP0DMP2 458 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 SNHG28P0DPA3 235 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 HSPD1P10809 573 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 GNAT1P11488 350 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 TFE3P19532 575 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ITPKAP23677 461 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 SOX18P35713 384 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ATXN1P54253 815 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 PLAURQ03405 335 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 UBE3AQ05086 875 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 UBAP2LQ14157 1087 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 PGM5Q15124 567 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 QRICH1Q2TAL8 776 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 CCDC81Q6ZN84 652 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 TSHZ1Q6ZSZ6 1077 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 THNSL1Q8IYQ7 743 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 C12orf76Q8N812 135 aaPredicted RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 CEP120Q8N960 986 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 TDRD5Q8NAT2 981 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 DNAJB3Q8WWF6 145 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 RUBCNQ92622 972 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ZBTB10Q96DT7 871 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 SRPK1Q96SB4 655 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 TRIM55Q9BYV6 548 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 NUCKS1Q9H1E3 243 aaKnown RBP7.51□□□□□ -1.21
LIMA1-204ENST00000549064 SEMA4AQ9H3S1 761 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 ECHDC1Q9NTX5 307 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 PCDHB12Q9Y5F1 795 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 C2orf16Q68DN1 1984 aa7.51□□□□□ -1.21
LIMA1-204ENST00000549064 CACNA1IQ9P0X4 2223 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 A0A096LPE4 126 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 A0A1W2PPZ6 126 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 FSD2A1L4K1 749 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 TBKBP1A7MCY6 615 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 SOBPA7XYQ1 873 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 KLF4O43474 513 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ORC4O43929 436 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 STAG3L1P0CL83 205 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 SCG2P13521 617 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 HOXB8P17481 243 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 CD33P20138 364 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 HOXA13P31271 388 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 SP4Q02446 784 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 LMNB2Q03252 620 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 TMEM62Q0P6H9 643 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 LBRQ14739 615 aaKnown RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 RARS2Q5T160 578 aaKnown RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 FAM102BQ5T8I3 360 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 VPS53Q5VIR6 699 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 PCNX4Q63HM2 1172 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 CES5AQ6NT32 575 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 KCNV1Q6PIU1 500 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 CYFIP1Q7L576 1253 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 DHX32Q7L7V1 743 aaKnown RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 VSIG10LQ86VR7 867 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ADGRF4Q8IZF3 695 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ZDHHC14Q8IZN3 488 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 COLGALT1Q8NBJ5 622 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ASAP3Q8TDY4 903 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 NKD1Q969G9 470 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 SPACA7Q96KW9 195 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 NECTIN4Q96NY8 510 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 GPR20Q99678 358 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 TCF25Q9BQ70 676 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 RTP3Q9BQQ7 232 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 USP26Q9BXU7 913 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ADAM7Q9H2U9 754 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 ENTPD7Q9NQZ7 604 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 MARK1Q9P0L2 795 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 GPN3Q9UHW5 284 aaPredicted RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 FBXL21Q9UKT6 434 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 STRIP2Q9ULQ0 834 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 MRPL11Q9Y3B7 192 aaKnown RBP7.5□□□□□ -1.21
LIMA1-204ENST00000549064 HCFC2Q9Y5Z7 792 aa7.5□□□□□ -1.21
LIMA1-204ENST00000549064 NARSO43776 548 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 BNIP3LO60238 219 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 MAN1A2O60476 641 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SP9P0CG40 484 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 PBX3P40426 434 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 MTHFRP42898 656 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 HSD17B4P51659 736 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 MRPS6P82932 125 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 RAB33AQ14088 237 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TMEM266Q2M3C6 531 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SEZ6Q53EL9 994 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SPECC1Q5M775 1068 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 ZMYM1Q5SVZ6 1142 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TAF2Q6P1X5 1199 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 BNC2Q6ZN30 1099 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 AGMOQ6ZNB7 445 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SUMF1Q8NBK3 374 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 FBXO27Q8NI29 283 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 MRPS27Q92552 414 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 CASP10Q92851 521 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms