RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CD83Q01151 205 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 GFOD2Q3B7J2 385 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 CXorf57Q6NSI4 855 aaKnown RBP5.36□□□□□ -1.55
VPS29-205ENST00000548539 SLC4A10Q6U841 1118 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 EPM2AIP1Q7L775 607 aaPredicted RBP5.36□□□□□ -1.55
VPS29-205ENST00000548539 CATIPQ7Z7H3 387 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 NOL10Q9BSC4 688 aaKnown RBP5.36□□□□□ -1.55
VPS29-205ENST00000548539 BTBD2Q9BX70 525 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 WNT8AQ9H1J5 351 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 IFT122Q9HBG6 1241 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 GEMIN8Q9NWZ8 242 aaKnown RBP5.36□□□□□ -1.55
VPS29-205ENST00000548539 GOLGA6AQ9NYA3 693 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 PRSS50Q9UI38 385 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 DENND2AQ9ULE3 1009 aa5.36□□□□□ -1.55
VPS29-205ENST00000548539 LPOP22079 712 aaPredicted RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 MSX2P35548 267 aaPredicted RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 IL12RB1P42701 662 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 SLC5A3P53794 718 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 HHEXQ03014 270 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 FOXL1Q12952 345 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 DUSP8Q13202 625 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 SPIDRQ14159 915 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 ZNF267Q14586 743 aaPredicted RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 UAP1L1Q3KQV9 507 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 RRP12Q5JTH9 1297 aaKnown RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 IFIT1BQ5T764 474 aaKnown RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 LRCH2Q5VUJ6 765 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 MBNL2Q5VZF2 373 aaKnown RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 GAREM2Q75VX8 874 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 SLC41A1Q8IVJ1 513 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 MIER2Q8N344 545 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 OR14C36Q8NHC7 312 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 GAB3Q8WWW8 586 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 ACE2Q9BYF1 805 aaPredicted RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 PUF60Q9UHX1 559 aaKnown RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 EVLQ9UI08 416 aaPredicted RBP5.35□□□□□ -1.55
VPS29-205ENST00000548539 SERPINB13Q9UIV8 391 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 PCDHB6Q9Y5E3 794 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 CDY2AQ9Y6F7 541 aa5.35□□□□□ -1.55
VPS29-205ENST00000548539 AP1G1O43747 822 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 MYBP10242 640 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 FXR1P51114 621 aaKnown RBP eCLIP5.34□□□□□ -1.55
VPS29-205ENST00000548539 TOP3AQ13472 1001 aaPredicted RBP5.34□□□□□ -1.55
VPS29-205ENST00000548539 CCDC142Q17RM4 750 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 WDR72Q3MJ13 1102 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 MINDY4Q4G0A6 757 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 KANK2Q63ZY3 851 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 OTOP2Q7RTS6 562 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 SGMS1Q86VZ5 419 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 CDYL2Q8N8U2 506 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 OR5AN1Q8NGI8 311 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 TIFAQ96CG3 184 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 PITHD1Q9GZP4 211 aaPredicted RBP5.34□□□□□ -1.55
VPS29-205ENST00000548539 SLC2A4RGQ9NR83 387 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 PARPBPQ9NWS1 579 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 OBP2AQ9NY56 170 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 CEP72Q9P209 647 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 DNM3Q9UQ16 869 aa5.34□□□□□ -1.55
VPS29-205ENST00000548539 A0A0A6YYJ9 748 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 MATN2O00339 956 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 VCAM1P19320 739 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 ADKP55263 362 aaKnown RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 ANTXR2P58335 489 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 STILQ15468 1287 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 MAP9Q49MG5 647 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 ARHGAP29Q52LW3 1261 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 DPP8Q6V1X1 898 aaPredicted RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 KSR2Q6VAB6 950 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 THEMISQ8N1K5 641 aaPredicted RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 SSH1Q8WYL5 1049 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 HIST1H2AHQ96KK5 128 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 NUP88Q99567 741 aaPredicted RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 HIST1H2AJQ99878 128 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 GTPBP4Q9BZE4 634 aaKnown RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 MSL2Q9HCI7 577 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 NMRK2Q9NPI5 230 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 DMRT3Q9NQL9 472 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS29-205ENST00000548539 PLA2G3Q9NZ20 509 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 KCMF1Q9P0J7 381 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 DDX20Q9UHI6 824 aaKnown RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 SAP30BPQ9UHR5 308 aaKnown RBP5.33□□□□□ -1.56
VPS29-205ENST00000548539 DNAI1Q9UI46 699 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 CDC42EP3Q9UKI2 254 aa5.33□□□□□ -1.56
VPS29-205ENST00000548539 TMEM191CA6NGB0 347 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 FOXN1O15353 648 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 CAND2O75155 1236 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 OFD1O75665 1012 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 KRT18P05783 430 aaKnown RBP5.32□□□□□ -1.56
VPS29-205ENST00000548539 U2AF1L5P0DN76 240 aaPredicted RBP5.32□□□□□ -1.56
VPS29-205ENST00000548539 HSPA6P17066 643 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 KRT4P19013 534 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 XPAP23025 273 aaPredicted RBP5.32□□□□□ -1.56
VPS29-205ENST00000548539 U2AF1Q01081 240 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS29-205ENST00000548539 MGAT5Q09328 741 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 GTF2H3Q13889 308 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 NFYCQ13952 458 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 ADRM1Q16186 407 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 DGKDQ16760 1214 aa5.32□□□□□ -1.56
VPS29-205ENST00000548539 GRAMD4Q6IC98 578 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms