RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 PPP6R3Q5H9R7 873 aaPredicted RBP13.3□□□□□ -0.28
COL4A6-209ENST00000545689 NYAP1Q6ZVC0 841 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 SKA2Q8WVK7 121 aaPredicted RBP13.3□□□□□ -0.28
COL4A6-209ENST00000545689 RNF25Q96BH1 459 aaPredicted RBP13.3□□□□□ -0.28
COL4A6-209ENST00000545689 SLC10A4Q96EP9 437 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 LRRC1Q9BTT6 524 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 ITIH2P19823 946 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 KRT17Q04695 432 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 FAM182BQ5T319 152 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM67Q6ZTA4 783 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 HNRNPLLQ8WVV9 542 aaKnown RBP13.3□□□□□ -0.28
COL4A6-209ENST00000545689 WRNIP1Q96S55 665 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 HSPBP1Q9NZL4 362 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM49P0CI25 452 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 TRIM49CP0CI26 452 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 PMLP29590 882 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 RNF168Q8IYW5 571 aaPredicted RBP13.3□□□□□ -0.28
COL4A6-209ENST00000545689 EPN3Q9H201 632 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 PREX1Q8TCU6 1659 aa13.3□□□□□ -0.28
COL4A6-209ENST00000545689 UCHL3P15374 230 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 PDIA2Q13087 525 aaKnown RBP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 HEATR6Q6AI08 1181 aaKnown RBP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 KSR1Q8IVT5 923 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 ESYT3A0FGR9 886 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 H3BRJ5 948 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 TMEM253P0C7T8 217 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 FXR1P51114 621 aaKnown RBP eCLIP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 CDC42EP1Q00587 391 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 KRT80Q6KB66 452 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 TSPYL2Q9H2G4 693 aaPredicted RBP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 MYMKA6NI61 221 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 CCDC22O60826 627 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 RASA1P20936 1047 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 MDH1P40925 334 aaKnown RBP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 NRBF2Q96F24 287 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF560Q96MR9 790 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 REEP2Q9BRK0 252 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 PPFIA2O75334 1257 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 ARFIP2P53365 341 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 BIRC2Q13490 618 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 XRRA1Q6P2D8 792 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 SAAL1Q96ER3 474 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 CHP1Q99653 195 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 CNTNAP4Q9C0A0 1308 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 ZBTB18Q99592 522 aa13.29□□□□□ -0.28
COL4A6-209ENST00000545689 JPH1Q9HDC5 661 aaPredicted RBP13.29□□□□□ -0.28
COL4A6-209ENST00000545689 FAM205CA6NFA0 338 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ASB14A6NK59 587 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 PPP1R3GB7ZBB8 358 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 PPP1R37O75864 691 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF677Q86XU0 584 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 N4BP2L2Q92802 583 aaPredicted RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 CLGNO14967 610 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 GYPCP04921 128 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 CASP2P42575 452 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 BCAR1P56945 870 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF394Q53GI3 561 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 XKR3Q5GH77 459 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 EFHC2Q5JST6 749 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 RAD9BQ6WBX8 426 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 C4orf50Q6ZRC1 276 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ZBED8Q8IZ13 594 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 SLC35G2Q8TBE7 412 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 KIDINS220Q9ULH0 1771 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 VGLL3A8MV65 326 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 PDHBP11177 359 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 NMT1P30419 496 aaKnown RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 TSPY1Q01534 308 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 RIT2Q99578 217 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ROPN1BQ9BZX4 212 aaPredicted RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ROPN1Q9HAT0 212 aaPredicted RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 SUN2Q9UH99 717 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 HPCAL4Q9UM19 191 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 MUTP22033 750 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 CYP2C19P33261 490 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ZNF746Q6NUN9 644 aaPredicted RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 POLR3CQ9BUI4 534 aaPredicted RBP13.28□□□□□ -0.28
COL4A6-209ENST00000545689 ECT2Q9H8V3 914 aa13.28□□□□□ -0.28
COL4A6-209ENST00000545689 FAM196BA6NMK8 535 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 APOL1O14791 398 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 ICE2Q659A1 982 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 TRAPPC11Q7Z392 1133 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 PARP9Q8IXQ6 854 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 ALKBH8Q96BT7 664 aaKnown RBP13.27□□□□□ -0.28
COL4A6-209ENST00000545689 COL3A1P02461 1466 aaPredicted RBP13.27□□□□□ -0.28
COL4A6-209ENST00000545689 RFC5P40937 340 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 EPHB1P54762 984 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 RWDD4Q6NW29 188 aaKnown RBP13.27□□□□□ -0.28
COL4A6-209ENST00000545689 LRRC31Q6UY01 552 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 RDM1Q8NG50 284 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 AMACRQ9UHK6 382 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 SLC8A2Q9UPR5 921 aa13.27□□□□□ -0.28
COL4A6-209ENST00000545689 GALCP54803 685 aa13.27□□□□□ -0.29
COL4A6-209ENST00000545689 PPP4CP60510 307 aa13.27□□□□□ -0.29
COL4A6-209ENST00000545689 STK4Q13043 487 aa13.27□□□□□ -0.29
COL4A6-209ENST00000545689 NAA30Q147X3 362 aaPredicted RBP13.27□□□□□ -0.29
COL4A6-209ENST00000545689 NCAPHQ15003 741 aa13.27□□□□□ -0.29
COL4A6-209ENST00000545689 PDCD2Q16342 344 aaPredicted RBP13.27□□□□□ -0.29
COL4A6-209ENST00000545689 FAM47EQ6ZV65 393 aa13.27□□□□□ -0.29
COL4A6-209ENST00000545689 RHPN2Q8IUC4 686 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms