RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 OATP04181 439 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 CENPBP07199 599 aaPredicted RBP17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 C8AP07357 584 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 CHRNB1P11230 501 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 RXRAP19793 462 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 ANTXR2P58335 489 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 TRDNQ13061 729 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 PPM1LQ5SGD2 360 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 UBXN11Q5T124 520 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 TYW1BQ6NUM6 668 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 ZNF654Q8IZM8 581 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 FAM3CQ92520 227 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 SH2D3AQ9BRG2 576 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 ANO3Q9BYT9 981 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 RNF39Q9H2S5 420 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 RBM12Q9NTZ6 932 aaKnown RBP17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 DNMT3BQ9UBC3 853 aaKnown RBP17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 PCDHA10Q9Y5I2 948 aa17.34■□□□□ 0.37
CLSTN3-216ENST00000545663 NOTCH4Q99466 2003 aa17.33■□□□□ 0.37
CLSTN3-216ENST00000545663 IGLV3-22A0A075B6J6 115 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 TMEM150BA6NC51 233 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 HNRNPA1P09651 372 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 UGCGQ16739 394 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 USP41Q3LFD5 358 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 RNF43Q68DV7 783 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 ZNF746Q6NUN9 644 aaPredicted RBP17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 C19orf48Q6RUI8 117 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 RAB11FIP4Q86YS3 637 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 ZNF577Q9BSK1 485 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 IER2Q9BTL4 223 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 DIAPH3Q9NSV4 1193 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 NRBP2Q9NSY0 501 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 MYH9P35579 1960 aaKnown RBP17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 GREB1Q4ZG55 1949 aa17.33■□□□□ 0.36
CLSTN3-216ENST00000545663 ADAM12O43184 909 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 SREBF1P36956 1147 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 PRKCEQ02156 737 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 DSC1Q08554 894 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 SLC5A9Q2M3M2 681 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 PABPC1LQ4VXU2 614 aaKnown RBP17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 RTP2Q5QGT7 225 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 LIN9Q5TKA1 542 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 FUT10Q6P4F1 479 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 Q6ZS52 159 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 NIPA1Q7RTP0 329 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 KBTBD6Q86V97 674 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 SPEM1Q8N4L4 309 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 DNASE1L2Q92874 299 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 KIF12Q96FN5 646 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 FAM167AQ96KS9 214 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 ZFP42Q96MM3 310 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 GAD1Q99259 594 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 MAP3K14Q99558 947 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 CLSTN3Q9BQT9 956 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 LZTS2Q9BRK4 669 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 BRD9Q9H8M2 597 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 ZBTB47Q9UFB7 747 aaPredicted RBP17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 SAMM50Q9Y512 469 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 NAV2Q8IVL1 2488 aa17.32■□□□□ 0.36
CLSTN3-216ENST00000545663 CNTNAP2Q9UHC6 1331 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 ARL5CA6NH57 179 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 EPN2O95208 641 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 FCARP24071 287 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 HOXA11P31270 313 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 TARBP2Q15633 366 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 WDR44Q5JSH3 913 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 PLA2G2CQ5R387 149 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 SH3PXD2AQ5TCZ1 1133 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 WWC2Q6AWC2 1192 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 RHPN2Q8IUC4 686 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 SMAP1Q8IYB5 467 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 SMG8Q8ND04 991 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 SLC7A14Q8TBB6 771 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 NLRP4Q96MN2 994 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 AGPAT5Q9NUQ2 364 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 SUCLA2Q9P2R7 463 aaPredicted RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 CACNG4Q9UBN1 327 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 MRPS23Q9Y3D9 190 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 PIAS3Q9Y6X2 628 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 CELSR3Q9NYQ7 3312 aa17.31■□□□□ 0.36
CLSTN3-216ENST00000545663 C4orf47A7E2U8 309 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 XYLBO75191 536 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 CYP21A2P08686 494 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 CCNE1P24864 410 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 MLH1P40692 756 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 RAP1GAPP47736 663 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 PXNP49023 591 aaPredicted RBP17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 SCNN1GP51170 649 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 SART3Q15020 963 aaKnown RBP17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 KIAA1211LQ6NV74 962 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 ELSPBP1Q96BH3 223 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 COLEC11Q9BWP8 271 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 RIC8AQ9NPQ8 531 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 KCNH3Q9ULD8 1083 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 TENM4Q6N022 2769 aa17.3■□□□□ 0.36
CLSTN3-216ENST00000545663 DDAH1O94760 285 aa17.29■□□□□ 0.36
CLSTN3-216ENST00000545663 FOSP01100 380 aaPredicted RBP17.29■□□□□ 0.36
CLSTN3-216ENST00000545663 CEBPBP17676 345 aa17.29■□□□□ 0.36
CLSTN3-216ENST00000545663 MTERF2Q49AM1 385 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms