RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 PDGFBP01127 241 aaPredicted RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 SSBP05455 408 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP28-215ENST00000545608 CNPP09543 421 aaKnown RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 ITGA4P13612 1032 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 ARL2P36404 184 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 TXKP42681 527 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 MTHFRP42898 656 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 VCPP55072 806 aaKnown RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 ST3GAL1Q11201 340 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 CALCRLQ16602 461 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 ATAT1Q5SQI0 421 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 KIAA1841Q6NSI8 718 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 TMC5Q6UXY8 1006 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 TAS1R1Q7RTX1 841 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 ZBTB33Q86T24 672 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 SUGP1Q8IWZ8 645 aaKnown RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 DIS3L2Q8IYB7 885 aaKnown RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 CNNM3Q8NE01 707 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 GTF3C6Q969F1 213 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 RIPOR3Q96MK2 946 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 FAM193BQ96PV7 902 aaPredicted RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 MTMR9Q96QG7 549 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 GAD1Q99259 594 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 SMOC2Q9H3U7 446 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 TTC12Q9H892 705 aaPredicted RBP9.42□□□□□ -0.9
USP28-215ENST00000545608 BRMS1Q9HCU9 246 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 ANKEF1Q9NU02 776 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 DZANK1Q9NVP4 752 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 MARCH5Q9NX47 278 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 KANSL3Q9P2N6 904 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 NR2E1Q9Y466 385 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 HES2Q9Y543 173 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 PIEZO1Q92508 2521 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 INO80B-WBP1J3KQ70 363 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 TRAK2O60296 914 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 DGAT1O75907 488 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 BRD1O95696 1058 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 NEFLP07196 543 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 ASGR2P07307 311 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 GLRA2P23416 452 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 KLRC2P26717 231 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 AVPR2P30518 371 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 AXLP30530 894 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 RARRES1P49788 294 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 CLCN4P51793 760 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 NEK4P51957 841 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 MBTD1Q05BQ5 628 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 POU5F1BQ06416 359 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 TCF15Q12870 199 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 CAPSQ13938 189 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 MXD4Q14582 209 aaPredicted RBP9.41□□□□□ -0.9
USP28-215ENST00000545608 CABP7Q86V35 215 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 PACS2Q86VP3 889 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 PPFIBP1Q86W92 1011 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 CDR2LQ86X02 465 aaPredicted RBP9.41□□□□□ -0.9
USP28-215ENST00000545608 COLGALT2Q8IYK4 626 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 PIGOQ8TEQ8 1089 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 EMILIN2Q9BXX0 1053 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 CSRNP2Q9H175 543 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 TMEM60Q9H2L4 133 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 UBN1Q9NPG3 1134 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 PPP4R2Q9NY27 417 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 LIMD1Q9UGP4 676 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 DBR1Q9UK59 544 aaKnown RBP9.41□□□□□ -0.9
USP28-215ENST00000545608 SORCS3Q9UPU3 1222 aa9.41□□□□□ -0.9
USP28-215ENST00000545608 PRG3Q9Y2Y8 225 aaPredicted RBP9.41□□□□□ -0.9
USP28-215ENST00000545608 ZDBF2Q9HCK1 2354 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 ARL5CA6NH57 179 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 POTEMA6NI47 508 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 F8W810 466 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 C2CD2LO14523 706 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 INPPL1O15357 1258 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 B4GALT5O43286 388 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 NEMFO60524 1076 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 EFEMP2O95967 443 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 SOD2P04179 222 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 SPATA31C1P0DKV0 1188 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 ARF4P18085 180 aaPredicted RBP9.4□□□□□ -0.9
USP28-215ENST00000545608 ATP2B1P20020 1258 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 MLH1P40692 756 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 OR1G1P47890 313 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 SCNN1GP51170 649 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 PTPN5P54829 565 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 GUCY1B3Q02153 619 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 DSC1Q08554 894 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 TFDP1Q14186 410 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 PCBP1Q15365 356 aaKnown RBP eCLIP9.4□□□□□ -0.9
USP28-215ENST00000545608 NOTUMQ6P988 496 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 MAEAQ7L5Y9 396 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 GPR149Q86SP6 731 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 RNF168Q8IYW5 571 aaPredicted RBP9.4□□□□□ -0.9
USP28-215ENST00000545608 ZDHHC14Q8IZN3 488 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 CCDC51Q96ER9 411 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 ZFP42Q96MM3 310 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 HERC2P3Q9BVR0 1158 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 APOL6Q9BWW8 343 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 GPRC5CQ9NQ84 441 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 MRPL17Q9NRX2 175 aaKnown RBP9.4□□□□□ -0.9
USP28-215ENST00000545608 USTQ9Y2C2 406 aa9.4□□□□□ -0.9
USP28-215ENST00000545608 TEX28O15482 410 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms