RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 RPL26P61254 145 aaKnown RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 MXRA7P84157 204 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 OCRLQ01968 901 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 WASHC5Q12768 1159 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 PLS1Q14651 629 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 LMBRD2Q68DH5 695 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 MFSD5Q6N075 450 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 NFXL1Q6ZNB6 911 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 CATSPERGQ6ZRH7 1159 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 DIS3L2Q8IYB7 885 aaKnown RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 SAMD3Q8N6K7 520 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 ATP8B4Q8TF62 1192 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 MAIP1Q8WWC4 291 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 KIFAP3Q92845 792 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 FAM136AQ96C01 138 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 NR1H4Q96RI1 486 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 IWS1Q96ST2 819 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 RNF26Q9BY78 433 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 CSRNP2Q9H175 543 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 TXLNGQ9NUQ3 528 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 PANK4Q9NVE7 773 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 ADAM22Q9P0K1 906 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 CSADQ9Y600 493 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 CAPN6Q9Y6Q1 641 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 F8VZ95 297 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 UBE2Q2LH0YL09 131 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 STRNO43815 780 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 DDAH1O94760 285 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 SUN1O94901 812 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 RHOBTB3O94955 611 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 TTLL1O95922 423 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 FAM153BP0C7A2 387 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 PIM1P11309 404 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 XBP1P17861 261 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 ABCD1P33897 745 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 CTNNA1P35221 906 aaKnown RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 NKX3-2P78367 333 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 ATP2C1P98194 919 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 GUCY2DQ02846 1103 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 TCP10Q12799 353 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 MAPRE1Q15691 268 aaKnown RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 SKIDA1Q1XH10 827 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 FAM153CQ494X1 144 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 KIAA1755Q5JYT7 1200 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 OR52E8Q6IFG1 317 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 TMC3Q7Z5M5 1100 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 KRT77Q7Z794 578 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 RELL1Q8IUW5 271 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 RASGEF1CQ8N431 466 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 LSM14AQ8ND56 463 aaKnown RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 HAPLN3Q96S86 360 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 LRMDAQ9H2I8 198 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 EPB41L1Q9H4G0 881 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 FAM217BQ9NTX9 383 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 CYP39A1Q9NYL5 469 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 SUN2Q9UH99 717 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 FAM153AQ9UHL3 310 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 CLEC11AQ9Y240 323 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 SSX2IPQ9Y2D8 614 aa5.65□□□□□ -1.5
USP28-213ENST00000544967 USP15Q9Y4E8 981 aaPredicted RBP5.65□□□□□ -1.5
USP28-213ENST00000544967 CYP2D7A0A087X1C5 515 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 FRMD3A2A2Y4 597 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 DPPA5A6NC42 116 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 IFRD1O00458 451 aaPredicted RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 ZNF213O14771 459 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 PSMA7O14818 248 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 FGFR1OPO95684 399 aaKnown RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 PDGFRBP09619 1106 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 SP100P23497 879 aaPredicted RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 CCT6AP40227 531 aaKnown RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 KIF11P52732 1056 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 PICALMQ13492 652 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 TTLL12Q14166 644 aaPredicted RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 KPNB1Q14974 876 aaKnown RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 NAB2Q15742 525 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 PTPN21Q16825 1174 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 USH1GQ495M9 461 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 C6orf118Q5T5N4 469 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 RRAGBQ5VZM2 374 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 ALKBH2Q6NS38 261 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 MOB2Q70IA6 237 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 ASAP3Q8TDY4 903 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 STK32AQ8WU08 396 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 PTPRN2Q92932 1015 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 DYNLL2Q96FJ2 89 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 SMC6Q96SB8 1091 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 ROPN1BQ9BZX4 212 aaPredicted RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 BRINP2Q9C0B6 783 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 VPS16Q9H269 839 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 TLE6Q9H808 572 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 ROPN1Q9HAT0 212 aaPredicted RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 LY9Q9HBG7 655 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.65□□□□□ -1.51
USP28-213ENST00000544967 NDUFA13Q9P0J0 144 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 CNOT8Q9UFF9 292 aaKnown RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 PRKAG3Q9UGI9 489 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 SAP30BPQ9UHR5 308 aaKnown RBP5.65□□□□□ -1.51
USP28-213ENST00000544967 INTUQ9ULD6 942 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 RABL2BQ9UNT1 228 aa5.65□□□□□ -1.51
USP28-213ENST00000544967 WDR37Q9Y2I8 494 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms