RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	TRIO	O75962	3097 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	MYO9B	Q13459	2157 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	EPOP	A6NHQ4	379 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	PIGR	P01833	764 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	SRGAP2C	P0DJJ0	459 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	EEF1G	P26641	437 aa	Known RBP	10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	CASP5	P51878	434 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	PTEN	P60484	403 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	PTK7	Q13308	1070 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	MKRN4P	Q13434	485 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	NCAPH	Q15003	741 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	ANKRD40	Q6AI12	368 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	ZPBP2	Q6X784	338 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	SERINC5	Q86VE9	423 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	SLC9A9	Q8IVB4	645 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	GJD3	Q8N144	294 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	CCDC155	Q8N6L0	562 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	NLRP7	Q8WX94	980 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	ARNTL2	Q8WYA1	636 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	BICD1	Q96G01	975 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	NLRP4	Q96MN2	994 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	GCOM2	Q9BZD3	368 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	WNT8A	Q9H1J5	351 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	KIAA1586	Q9HCI6	787 aa		10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	PRMT7	Q9NVM4	692 aa	Predicted RBP	10.41	□□□□□ -0.74
YBX3-215	ENST00000544504	INO80B-WBP1	J3KQ70	363 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	HNRNPDL	O14979	420 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	TREH	O43280	583 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	CBFA2T2	O43439	604 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	PRKCB	P05771	671 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	GART	P22102	1010 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	LIG4	P49917	911 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	GPC3	P51654	580 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	CRYBB1	P53674	252 aa	Predicted RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	NLRP11	P59045	1033 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	TAP1	Q03518	808 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	PPP2R3A	Q06190	1150 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	DRP2	Q13474	957 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	PTGIS	Q16647	500 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FAM187B	Q17R55	369 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FILIP1L	Q4L180	1135 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	GDF6	Q6KF10	455 aa	Predicted RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FILIP1	Q7Z7B0	1213 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	GLIS3	Q8NEA6	775 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	PHOSPHO2	Q8TCD6	241 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	VWCE	Q96DN2	955 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FBXL18	Q96ME1	805 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	SLC9A7	Q96T83	725 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	DUSP9	Q99956	384 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	MKNK1	Q9BUB5	465 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	SRRT	Q9BXP5	876 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	MRPL4	Q9BYD3	311 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FGFBP2	Q9BYJ0	223 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FAM49A	Q9H0Q0	323 aa	Predicted RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	METTL14	Q9HCE5	456 aa	Known RBP	10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	FANCL	Q9NW38	375 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	LMCD1	Q9NZU5	365 aa		10.4	□□□□□ -0.74
YBX3-215	ENST00000544504	ADGRA3	Q8IWK6	1321 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	GBF1	Q92538	1859 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504		A0A087WZ62	844 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	TRIM49B	A6NDI0	452 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ACKR2	O00590	384 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	MAPK13	O15264	365 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	SLC16A3	O15427	465 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	B4GALT4	O60513	344 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ERLIN2	O94905	339 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	LDHA	P00338	332 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	VTN	P04004	478 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	NR3C1	P04150	777 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	EPB41	P11171	864 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ACTN1	P12814	892 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ZNF18	P17022	549 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	SFPQ	P23246	707 aa	Known RBP eCLIP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	NR2F2	P24468	414 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	HOXD13	P35453	343 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	MRPS6	P82932	125 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ADAM9	Q13443	819 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	PRPF4B	Q13523	1007 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	KYAT1	Q16773	422 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	TMEM132A	Q24JP5	1023 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	CDKAL1	Q5VV42	579 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ARMCX5	Q6P1M9	558 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	SARM1	Q6SZW1	724 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	USP37	Q86T82	979 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	DNAJB3	Q8WWF6	145 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	SCLY	Q96I15	445 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	FDXACB1	Q9BRP7	624 aa	Predicted RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	CCDC113	Q9H0I3	377 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	TRPV6	Q9H1D0	765 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	FZD8	Q9H461	694 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	AGPAT3	Q9NRZ7	376 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	FRMD4B	Q9Y2L6	1034 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	TRPV2	Q9Y5S1	764 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	PRRC2B	Q5JSZ5	2229 aa	Known RBP	10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	EVPL	Q92817	2033 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	ZMYM2	Q9UBW7	1377 aa		10.39	□□□□□ -0.75
YBX3-215	ENST00000544504	GRIN2D	O15399	1336 aa		10.38	□□□□□ -0.75
YBX3-215	ENST00000544504	KCNJ18	B7U540	433 aa		10.38	□□□□□ -0.75

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