RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 SYCP3Q8IZU3 236 aa20.55■□□□□ 0.88
VPS33A-205ENST00000541169 SMG8Q8ND04 991 aaKnown RBP20.55■□□□□ 0.88
VPS33A-205ENST00000541169 ZNF507Q8TCN5 953 aa20.55■□□□□ 0.88
VPS33A-205ENST00000541169 CLP1Q92989 425 aaKnown RBP20.55■□□□□ 0.88
VPS33A-205ENST00000541169 CCDC94Q9BW85 323 aaPredicted RBP20.55■□□□□ 0.88
VPS33A-205ENST00000541169 TBKBP1A7MCY6 615 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 GADD45BO75293 160 aaPredicted RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 PBX2P40425 430 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 GRM5P41594 1212 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 FXR1P51114 621 aaKnown RBP eCLIP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 YARSP54577 528 aaKnown RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 ZC2HC1CQ53FD0 456 aaPredicted RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 NOMO2Q5JPE7 1267 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 EPM2AIP1Q7L775 607 aaPredicted RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 TMCO2Q7Z6W1 182 aaPredicted RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 GRAMD1CQ8IYS0 662 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 CASD1Q96PB1 797 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 TGS1Q96RS0 853 aaKnown RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 TSPAN18Q96SJ8 248 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 PLVAPQ9BX97 442 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 NKX2-4Q9H2Z4 354 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 ZNF576Q9H609 170 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 TBC1D7Q9P0N9 293 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 YBX2Q9Y2T7 364 aaKnown RBP20.54■□□□□ 0.88
VPS33A-205ENST00000541169 STYXL1Q9Y6J8 313 aa20.54■□□□□ 0.88
VPS33A-205ENST00000541169 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.53■□□□□ 0.88
VPS33A-205ENST00000541169 LINC01553A4QN01 128 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 TTLL13PA6NNM8 815 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 KLRC4O43908 158 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 OFD1O75665 1012 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 RB1P06400 928 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 FGFR1P11362 822 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 MATR3P43243 847 aaKnown RBP eCLIP20.53■□□□□ 0.88
VPS33A-205ENST00000541169 BMT2Q1RMZ1 405 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 KMT5BQ4FZB7 885 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 AGMOQ6ZNB7 445 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 GOLGA5Q8TBA6 731 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 CDT1Q9H211 546 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 NXF3Q9H4D5 531 aaKnown RBP20.53■□□□□ 0.88
VPS33A-205ENST00000541169 ANKFY1Q9P2R3 1169 aa20.53■□□□□ 0.88
VPS33A-205ENST00000541169 FNDC1Q4ZHG4 1894 aaPredicted RBP20.53■□□□□ 0.88
VPS33A-205ENST00000541169 RALGAPA2Q2PPJ7 1873 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 A0A0B4J269 797 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 SOX1O00570 391 aaPredicted RBP20.52■□□□□ 0.88
VPS33A-205ENST00000541169 LDHAP00338 332 aaKnown RBP20.52■□□□□ 0.88
VPS33A-205ENST00000541169 EDN1P05305 212 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 MYBP10242 640 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 LAG3P18627 525 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 IBSPP21815 317 aaPredicted RBP20.52■□□□□ 0.88
VPS33A-205ENST00000541169 GARTP22102 1010 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 ERVK-21P61565 698 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 TAP1Q03518 808 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 CLLU1OSQ5K130 101 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 EEF1DP3Q658K8 133 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 SPATA20Q8TB22 786 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 HELQQ8TDG4 1101 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 SMARCE1Q969G3 411 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 ACAP3Q96P50 834 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 GBP3Q9H0R5 595 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 PLEKHA5Q9HAU0 1116 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 STK39Q9UEW8 545 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 PARP2Q9UGN5 583 aa20.52■□□□□ 0.88
VPS33A-205ENST00000541169 ARL5CA6NH57 179 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 C5orf67F2Z3F1 127 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 ABLIM1O14639 778 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 OGTO15294 1046 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 CLTAP09496 248 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 MYOGP15173 224 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 CASP1P29466 404 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 PPP1R2P41236 205 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 CASP5P51878 434 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 RNASELQ05823 741 aaKnown RBP20.51■□□□□ 0.87
VPS33A-205ENST00000541169 HS2ST1Q7LGA3 356 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 CDR2LQ86X02 465 aaPredicted RBP20.51■□□□□ 0.87
VPS33A-205ENST00000541169 LRCH3Q96II8 777 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 RPS6KC1Q96S38 1066 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 MSTO1Q9BUK6 570 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 LMBRD1Q9NUN5 540 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 RNF19AQ9NV58 838 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 PCDHB12Q9Y5F1 795 aa20.51■□□□□ 0.87
VPS33A-205ENST00000541169 PTMSP20962 102 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 PPM1AP35813 382 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 BMPR1AP36894 532 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 KNOP1Q1ED39 458 aaKnown RBP20.5■□□□□ 0.87
VPS33A-205ENST00000541169 ZBTB33Q86T24 672 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 CD302Q8IX05 232 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 POMGNT1Q8WZA1 660 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 LPPQ93052 612 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 P2RX5Q93086 422 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 FAM193BQ96PV7 902 aaPredicted RBP20.5■□□□□ 0.87
VPS33A-205ENST00000541169 C11orf84Q9BUA3 381 aaPredicted RBP20.5■□□□□ 0.87
VPS33A-205ENST00000541169 KIAA1586Q9HCI6 787 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 SLC39A2Q9NP94 309 aa20.5■□□□□ 0.87
VPS33A-205ENST00000541169 LCHNA4D1U4 455 aa20.49■□□□□ 0.87
VPS33A-205ENST00000541169 MBD3O95983 291 aa20.49■□□□□ 0.87
VPS33A-205ENST00000541169 ALDH7A1P49419 539 aaKnown RBP20.49■□□□□ 0.87
VPS33A-205ENST00000541169 GRIK3Q13003 919 aa20.49■□□□□ 0.87
VPS33A-205ENST00000541169 PNOCQ13519 176 aa20.49■□□□□ 0.87
VPS33A-205ENST00000541169 COBLL1Q53SF7 1204 aa20.49■□□□□ 0.87
VPS33A-205ENST00000541169 SPOUT1Q5T280 376 aaKnown RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms