RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MMEL1Q495T6 779 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 ACCSLQ4AC99 568 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 KCTD17Q8N5Z5 321 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 GMCL1P1Q8NEA9 526 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 CHMP6Q96FZ7 201 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 GMCL1Q96IK5 515 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 VPS39Q96JC1 886 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 VCX3BQ9H321 246 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 PDE11AQ9HCR9 933 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 PARVAQ9NVD7 372 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 CPA4Q9UI42 421 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 PODXLO00592 558 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 MSH4O15457 936 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 ZC2HC1CQ53FD0 456 aaPredicted RBP15.01□□□□□ -0.01
USP3-204ENST00000540797 PDXDC1Q6P996 788 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 ADSSL1Q8N142 457 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 GPC2Q8N158 579 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 AKT1S1Q96B36 256 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 SP110Q9HB58 689 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 CYP26B1Q9NR63 512 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 NWD1Q149M9 1564 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 PPLO60437 1756 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 IGSF9BQ9UPX0 1349 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 DAGLBQ8NCG7 672 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 SPDYE1Q8NFV5 336 aaPredicted RBP15.01□□□□□ -0.01
USP3-204ENST00000540797 UNC45AQ9H3U1 944 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 NLRP11P59045 1033 aaKnown RBP15.01□□□□□ -0.01
USP3-204ENST00000540797 AGPAT1Q99943 283 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 SALL1Q9NSC2 1324 aa15.01□□□□□ -0.01
USP3-204ENST00000540797 H3BRJ5 948 aa15□□□□□ -0.01
USP3-204ENST00000540797 TAP1Q03518 808 aa15□□□□□ -0.01
USP3-204ENST00000540797 STILQ15468 1287 aa15□□□□□ -0.01
USP3-204ENST00000540797 ADGRA1Q86SQ6 560 aa15□□□□□ -0.01
USP3-204ENST00000540797 DHX40Q8IX18 779 aaKnown RBP15□□□□□ -0.01
USP3-204ENST00000540797 POLR3CQ9BUI4 534 aaPredicted RBP15□□□□□ -0.01
USP3-204ENST00000540797 KRT3P12035 628 aa15□□□□□ -0.01
USP3-204ENST00000540797 ARL4CP56559 192 aa15□□□□□ -0.01
USP3-204ENST00000540797 STX1BP61266 288 aa15□□□□□ -0.01
USP3-204ENST00000540797 NOTUMQ6P988 496 aa15□□□□□ -0.01
USP3-204ENST00000540797 CATSPER3Q86XQ3 398 aa15□□□□□ -0.01
USP3-204ENST00000540797 BCAR1P56945 870 aa15□□□□□ -0.01
USP3-204ENST00000540797 TADA2BQ86TJ2 420 aa15□□□□□ -0.01
USP3-204ENST00000540797 EDEM3Q9BZQ6 932 aa15□□□□□ -0.01
USP3-204ENST00000540797 DDX56Q9NY93 547 aaKnown RBP15□□□□□ -0.01
USP3-204ENST00000540797 FAM205AQ6ZU69 1335 aa15□□□□□ -0.01
USP3-204ENST00000540797 CTDNEP1O95476 244 aa15□□□□□ -0.01
USP3-204ENST00000540797 STK4Q13043 487 aa15□□□□□ -0.01
USP3-204ENST00000540797 RHOT1Q8IXI2 618 aa15□□□□□ -0.01
USP3-204ENST00000540797 WHAMMQ8TF30 809 aa15□□□□□ -0.01
USP3-204ENST00000540797 TJP2Q9UDY2 1190 aa15□□□□□ -0.01
USP3-204ENST00000540797 PDGFRBP09619 1106 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 HEATR6Q6AI08 1181 aaKnown RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 KLC3Q6P597 504 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 TRPC7Q9HCX4 862 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 RASGRF2O14827 1237 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 FMO5P49326 533 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 SAYSD1Q9NPB0 183 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 APEX2Q9UBZ4 518 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 VWDEQ8N2E2 1590 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 WNT10BO00744 389 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 THPOP40225 353 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 OR1G1P47890 313 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GABPB1Q06547 395 aaPredicted RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 CUL1Q13616 776 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 USP49Q70CQ1 688 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 RAB3IPQ96QF0 476 aaPredicted RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 DDX50Q9BQ39 737 aaKnown RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 PCDHB7Q9Y5E2 793 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 NPTXRO95502 500 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 SH2D4BQ5SQS7 431 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 FBXO41Q8TF61 875 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 C18orf8Q96DM3 657 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GLIS2Q9BZE0 524 aaPredicted RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 MID2Q9UJV3 735 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GOLGA8QA0A0J9YX86 632 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 IQANK1A0A1B0GTG1 560 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GOLGA8OA6NCC3 632 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GOLGA8NF8WBI6 632 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 PIK3R2O00459 728 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 EIF3DO15371 548 aaKnown RBP eCLIP14.99□□□□□ -0.01
USP3-204ENST00000540797 PAPOLAP51003 745 aaKnown RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 RAD51Q06609 339 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 AP1B1Q10567 949 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 ZNF211Q13398 564 aaPredicted RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 MAP3K21Q5TCX8 1036 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 FBXO16Q8IX29 292 aaPredicted RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 RNF10Q8N5U6 811 aaKnown RBP14.99□□□□□ -0.01
USP3-204ENST00000540797 SAMD3Q8N6K7 520 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 STK38LQ9Y2H1 464 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 SNX24Q9Y343 169 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 FIS1Q9Y3D6 152 aa14.99□□□□□ -0.01
USP3-204ENST00000540797 GAS2O43903 313 aaKnown RBP14.98□□□□□ -0.01
USP3-204ENST00000540797 SEC31AO94979 1220 aaKnown RBP14.98□□□□□ -0.01
USP3-204ENST00000540797 CA4P22748 312 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 PCK1P35558 622 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 SV2CQ496J9 727 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 MORC4Q8TE76 937 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 PRRG1O14668 218 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 SLC37A4O43826 429 aa14.98□□□□□ -0.01
USP3-204ENST00000540797 TOM1L1O75674 476 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms