RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 GIT2Q14161 759 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 CTC1Q2NKJ3 1217 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 EP400NLQ6ZTU2 488 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 CEP120Q8N960 986 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 TMEM161BQ8NDZ6 487 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 MICAL1Q8TDZ2 1067 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 SPIRE2Q8WWL2 714 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 IGSF21Q96ID5 467 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 CHAMP1Q96JM3 812 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 ZNF396Q96N95 335 aaPredicted RBP16.58■□□□□ 0.24
UBE3B-212ENST00000540230 ACO2Q99798 780 aaKnown RBP16.58■□□□□ 0.24
UBE3B-212ENST00000540230 TCF25Q9BQ70 676 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 NTPCRQ9BSD7 190 aaKnown RBP16.58■□□□□ 0.24
UBE3B-212ENST00000540230 TARS2Q9BW92 718 aaKnown RBP16.58■□□□□ 0.24
UBE3B-212ENST00000540230 VN1R3Q9BXE9 311 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 UBN1Q9NPG3 1134 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 CACNG4Q9UBN1 327 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 DAXXQ9UER7 740 aaPredicted RBP16.58■□□□□ 0.24
UBE3B-212ENST00000540230 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
UBE3B-212ENST00000540230 HIDE1A8MVS5 230 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 F8W810 466 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 DLL1O00548 723 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 PER2O15055 1255 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 TBX10O75333 385 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 RECQL4O94761 1208 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 BMP1P13497 986 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 DDIT3P35638 169 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 NRIP1P48552 1158 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 RBM10P98175 930 aaKnown RBP16.57■□□□□ 0.24
UBE3B-212ENST00000540230 DSC1Q08554 894 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 COLGALT2Q8IYK4 626 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 TMEM169Q96HH4 297 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 ADPGKQ9BRR6 497 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 PANK2Q9BZ23 570 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 KANSL3Q9P2N6 904 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 ODF2LQ9ULJ1 636 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 TNFSF13BQ9Y275 285 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 TRIP11Q15643 1979 aa16.57■□□□□ 0.24
UBE3B-212ENST00000540230 ABLIM1O14639 778 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 NRP1O14786 923 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 PPP6R2O75170 966 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 YEATS4O95619 227 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 GLP2RO95838 553 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 MAPTP10636 758 aaKnown RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 ZNF131P52739 623 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 NCKAP1LP55160 1127 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 KRT17Q04695 432 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 HACE1Q8IYU2 909 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 AUTS2Q8WXX7 1259 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 ZBTB45Q96K62 511 aaPredicted RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 NECAB3Q96P71 396 aaPredicted RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 FIZ1Q96SL8 496 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 MRPL4Q9BYD3 311 aaKnown RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 CDT1Q9H211 546 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 PTPRHQ9HD43 1115 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 ENTPD7Q9NQZ7 604 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 MARCH5Q9NX47 278 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 CCDC39Q9UFE4 941 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 PUF60Q9UHX1 559 aaKnown RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 GDAQ9Y2T3 454 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 PRG3Q9Y2Y8 225 aaPredicted RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 RBM19Q9Y4C8 960 aaKnown RBP16.56■□□□□ 0.24
UBE3B-212ENST00000540230 TTC28Q96AY4 2481 aa16.56■□□□□ 0.24
UBE3B-212ENST00000540230 PTGESO14684 152 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 DNM1Q05193 864 aaKnown RBP16.55■□□□□ 0.24
UBE3B-212ENST00000540230 RRAGBQ5VZM2 374 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 TMC7Q7Z402 723 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 VN1R2Q8NFZ6 395 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 RABGGTAQ92696 567 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 FAM193BQ96PV7 902 aaPredicted RBP16.55■□□□□ 0.24
UBE3B-212ENST00000540230 TMEM175Q9BSA9 504 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ZBP1Q9H171 429 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 LARSQ9P2J5 1176 aaKnown RBP16.55■□□□□ 0.24
UBE3B-212ENST00000540230 STK17AQ9UEE5 414 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 CUL9Q8IWT3 2517 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 MYMKA6NI61 221 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 FAM13AO94988 1023 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 BRD1O95696 1058 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 KRT18P05783 430 aaKnown RBP16.55■□□□□ 0.24
UBE3B-212ENST00000540230 PDIA4P13667 645 aaKnown RBP16.55■□□□□ 0.24
UBE3B-212ENST00000540230 PROZP22891 400 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 TXLNAP40222 546 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 OR1G1P47890 313 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ADAM15Q13444 863 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 CLUL1Q15846 466 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 AAK1Q2M2I8 961 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 DCAF4L1Q3SXM0 396 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 LEXMQ3ZCV2 418 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ZNF568Q3ZCX4 644 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 SHC4Q6S5L8 630 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 DYMQ7RTS9 669 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ZBTB33Q86T24 672 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 VPS52Q8N1B4 723 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 MYCT1Q8N699 235 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 PDILTQ8N807 584 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ADAMTS19Q8TE59 1207 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 PAAF1Q9BRP4 392 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 ZHX3Q9H4I2 956 aa16.55■□□□□ 0.24
UBE3B-212ENST00000540230 TLE6Q9H808 572 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms