RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 LY9Q9HBG7 655 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 AGO4Q9HCK5 861 aaKnown RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 ZNF334Q9HCZ1 680 aaPredicted RBP10.35□□□□□ -0.75
USP28-205ENST00000537706 CHST7Q9NS84 486 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 MARCH5Q9NX47 278 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 PCDHB2Q9Y5E7 798 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 DOCK8Q8NF50 2099 aa10.35□□□□□ -0.75
USP28-205ENST00000537706 GREB1Q4ZG55 1949 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 PSAPP07602 524 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 GDI1P31150 447 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 ZNF76P36508 570 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 CREB5Q02930 508 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 AXDND1Q5T1B0 1012 aaPredicted RBP10.34□□□□□ -0.75
USP28-205ENST00000537706 TANGO2Q6ICL3 276 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 TCEAL6Q6IPX3 200 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 PDXDC1Q6P996 788 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 YAF2Q8IY57 180 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 TCEAL3Q969E4 200 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 SCUBE2Q9NQ36 999 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 SLC8A2Q9UPR5 921 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 CNOT1A5YKK6 2376 aaKnown RBP10.34□□□□□ -0.75
USP28-205ENST00000537706 ADAMTS20P59510 1910 aa10.34□□□□□ -0.75
USP28-205ENST00000537706 SHISA7A6NL88 538 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 PSMC3P17980 439 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 KPNA1P52294 538 aaPredicted RBP10.33□□□□□ -0.76
USP28-205ENST00000537706 FUT10Q6P4F1 479 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 BBC3Q96PG8 261 aaPredicted RBP10.33□□□□□ -0.76
USP28-205ENST00000537706 ZNF197O14709 1029 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 CYTH3O43739 400 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 B4GALT3O60512 393 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 ATG13O75143 517 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 RPL17P18621 184 aaKnown RBP10.33□□□□□ -0.76
USP28-205ENST00000537706 MX1P20591 662 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 SCAPQ12770 1279 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 GAS6Q14393 721 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 CEP55Q53EZ4 464 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 AGMOQ6ZNB7 445 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 ZNF410Q86VK4 478 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 COLGALT2Q8IYK4 626 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 LINC01465Q8N7H1 131 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 FAM227BQ96M60 508 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 DACH1Q9UI36 760 aa10.33□□□□□ -0.76
USP28-205ENST00000537706 MAFBQ9Y5Q3 323 aaPredicted RBP10.33□□□□□ -0.76
USP28-205ENST00000537706 SETXQ7Z333 2677 aaKnown RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 A0A0D9SFI3 127 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 FAM221BA6H8Z2 402 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 CAPN8A6NHC0 703 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 MEIS3P2A8K0S8 358 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 CCNE2O96020 404 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 ITGA4P13612 1032 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 PLA2G2AP14555 144 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 SIM1P81133 766 aaPredicted RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 TRDNQ13061 729 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 ITGB3BPQ13352 177 aaPredicted RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 SART3Q15020 963 aaKnown RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 ZNF423Q2M1K9 1284 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 PLK5Q496M5 336 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 CATIPQ7Z7H3 387 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 MRPL10Q7Z7H8 261 aaKnown RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 C11orf74Q86VG3 221 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 SMAP1Q8IYB5 467 aaPredicted RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 SLC7A14Q8TBB6 771 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 LZTS2Q9BRK4 669 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 DNMT3BQ9UBC3 853 aaKnown RBP10.32□□□□□ -0.76
USP28-205ENST00000537706 RAI2Q9Y5P3 530 aa10.32□□□□□ -0.76
USP28-205ENST00000537706 BCLAF3A2AJT9 711 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 TADA2AO75478 443 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 CSDE1O75534 798 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 ATP4AP20648 1035 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 LMAN2Q12907 356 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 UBE2SQ16763 222 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SLC35G1Q2M3R5 365 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 ZNF589Q86UQ0 364 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 MAP4K3Q8IVH8 894 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 HACE1Q8IYU2 909 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 CTCFLQ8NI51 663 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 E2F7Q96AV8 911 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SPZ1Q9BXG8 430 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 DCTPP1Q9H773 170 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 AVENQ9NQS1 362 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 RBM12Q9NTZ6 932 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 GABBR1Q9UBS5 961 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 ADAM28Q9UKQ2 775 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 PCDHB15Q9Y5E8 787 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 FLNBO75369 2602 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 LNP1A1A4G5 178 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 J3QKU1 62 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 MAP3K13O43283 966 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 FOSP01100 380 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 RHOP08100 348 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 PTPN2P17706 415 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SMARCA1P28370 1054 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 GNAQP50148 359 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 NMIQ13287 307 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 HNRNPDQ14103 355 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 SEC23AQ15436 765 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 LARP1BQ659C4 914 aaKnown RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 ZNF746Q6NUN9 644 aaPredicted RBP10.31□□□□□ -0.76
USP28-205ENST00000537706 NIPA1Q7RTP0 329 aa10.31□□□□□ -0.76
USP28-205ENST00000537706 SLC39A7Q92504 469 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms