RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 B4E1Z4 1266 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 MGST3O14880 152 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 PROP1O75360 226 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 CDKL5O76039 1030 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 ZFPL1O95159 310 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 PCDH8O95206 1070 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 FOSP01100 380 aaPredicted RBP3.74□□□□□ -1.81
SKA3-207ENST00000536239 CLEC2LP0C7M8 214 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 FDXRP22570 491 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 KRTAP10-6P60371 365 aaPredicted RBP3.74□□□□□ -1.81
SKA3-207ENST00000536239 SRSF4Q08170 494 aaKnown RBP3.74□□□□□ -1.81
SKA3-207ENST00000536239 ANKS6Q68DC2 871 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 GPR149Q86SP6 731 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 RTF1Q92541 710 aaKnown RBP3.74□□□□□ -1.81
SKA3-207ENST00000536239 Q96MF0 132 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 CABP5Q9NP86 173 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 SIRPGQ9P1W8 387 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 PCDHB6Q9Y5E3 794 aa3.74□□□□□ -1.81
SKA3-207ENST00000536239 TBKBP1A7MCY6 615 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 B5MCH6 92 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 SEC24DO94855 1032 aaPredicted RBP3.73□□□□□ -1.81
SKA3-207ENST00000536239 CFIP05156 583 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 RANGAP1P46060 587 aaPredicted RBP3.73□□□□□ -1.81
SKA3-207ENST00000536239 Q6ZNX1 250 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 CDYL2Q8N8U2 506 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 FOXJ2Q9P0K8 574 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 B4GALT6Q9UBX8 382 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 SPO11Q9Y5K1 396 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 ZMYM3Q14202 1370 aa3.73□□□□□ -1.81
SKA3-207ENST00000536239 A0A1W2PR48 441 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 ELL2O00472 640 aaPredicted RBP3.72□□□□□ -1.81
SKA3-207ENST00000536239 IGFALSP35858 605 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 BMT2Q1RMZ1 405 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 ZNF425Q6IV72 752 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 ZZZ3Q8IYH5 903 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 FAM9AQ8IZU1 332 aaPredicted RBP3.72□□□□□ -1.81
SKA3-207ENST00000536239 RNF169Q8NCN4 708 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 TFAP2CQ92754 450 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 NEU1Q99519 415 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 FDXACB1Q9BRP7 624 aaPredicted RBP3.72□□□□□ -1.81
SKA3-207ENST00000536239 KLK15Q9H2R5 256 aa3.72□□□□□ -1.81
SKA3-207ENST00000536239 KAT6AQ92794 2004 aa3.71□□□□□ -1.81
SKA3-207ENST00000536239 RGS19P49795 217 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 UBE3CQ15386 1083 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 SPDYE7PQ495Y7 208 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 CREB3L3Q68CJ9 461 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 JMYQ8N9B5 988 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 ZSWIM2Q8NEG5 633 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 FERMT2Q96AC1 680 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 FUBP1Q96AE4 644 aaKnown RBP3.71□□□□□ -1.82
SKA3-207ENST00000536239 PDLIM2Q96JY6 352 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 CDC5LQ99459 802 aaKnown RBP3.71□□□□□ -1.82
SKA3-207ENST00000536239 ALOXE3Q9BYJ1 711 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 MTFR1LQ9H019 292 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 NCOA5Q9HCD5 579 aaKnown RBP3.71□□□□□ -1.82
SKA3-207ENST00000536239 TOMM22Q9NS69 142 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 SLC17A6Q9P2U8 582 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 ZNF70Q9UC06 446 aaPredicted RBP3.71□□□□□ -1.82
SKA3-207ENST00000536239 USP18Q9UMW8 372 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 ATP11BQ9Y2G3 1177 aa3.71□□□□□ -1.82
SKA3-207ENST00000536239 WDR91A4D1P6 747 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 FAM221BA6H8Z2 402 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 DRGXA6NNA5 263 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 ASLP04424 464 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 PFKMP08237 780 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 ELANEP08246 267 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 HOXB6P17509 224 aaKnown RBP3.7□□□□□ -1.82
SKA3-207ENST00000536239 XPAP23025 273 aaPredicted RBP3.7□□□□□ -1.82
SKA3-207ENST00000536239 GPR15P49685 360 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 OCA2Q04671 838 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 RASA3Q14644 834 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 AGAP9Q5VTM2 703 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 ZNF788Q6ZQV5 615 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 TMEM132CQ8N3T6 1108 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 GAB3Q8WWW8 586 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 ZMAT4Q9H898 229 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 LRIT1Q9P2V4 623 aa3.7□□□□□ -1.82
SKA3-207ENST00000536239 PPP1R1BQ9UD71 204 aaPredicted RBP3.7□□□□□ -1.82
SKA3-207ENST00000536239 CBX4O00257 560 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 PLD2O14939 933 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 NRP2O60462 931 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 POU3F3P20264 500 aaPredicted RBP3.69□□□□□ -1.82
SKA3-207ENST00000536239 CD40P25942 277 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 CHN2P52757 468 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 NRG3P56975 720 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 PROK1P58294 105 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 MRPS35P82673 323 aaKnown RBP3.69□□□□□ -1.82
SKA3-207ENST00000536239 MGAT5Q09328 741 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 GPR162Q16538 588 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 CCDC178Q5BJE1 867 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 B3GNTL1Q67FW5 361 aaPredicted RBP3.69□□□□□ -1.82
SKA3-207ENST00000536239 LMBR1LQ6UX01 489 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 MAPKAPK5Q8IW41 473 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 RHOT2Q8IXI1 618 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 OR56A1Q8NGH5 318 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 ZFP28Q8NHY6 868 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 CLUHP3Q96NS8 147 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 DEPDC7Q96QD5 511 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 DNAJC7Q99615 494 aa3.69□□□□□ -1.82
SKA3-207ENST00000536239 CASS4Q9NQ75 786 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms