RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 UBXN11Q5T124 520 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 PPP4R3AQ6IN85 833 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 FUT10Q6P4F1 479 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 SPATA31D4Q6ZUB0 917 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 MTSS1LQ765P7 747 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 TAS1R1Q7RTX1 841 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 GLYCTKQ8IVS8 523 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 C4orf19Q8IY42 314 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 FEZF2Q8TBJ5 459 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 AGXT2Q9BYV1 514 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 BCO2Q9BYV7 579 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 PRKD2Q9BZL6 878 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 NT5C3AQ9H0P0 336 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 CSRNP2Q9H175 543 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 ZSWIM4Q9H7M6 989 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 MINDY3Q9H8M7 445 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 SLC2A4RGQ9NR83 387 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 SNX14Q9Y5W7 946 aa12.86□□□□□ -0.35
CMTM1-216ENST00000533078 SF3B1O75533 1304 aaKnown RBP eCLIP12.86□□□□□ -0.35
CMTM1-216ENST00000533078 EML1O00423 815 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 TBX3O15119 743 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 CCNT1O60563 726 aaKnown RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 TSPAN1O60635 241 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 XYLBO75191 536 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 CDKL5O76039 1030 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 SP9P0CG40 484 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 SDHBP21912 280 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 HSPA4P34932 840 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 DSC1Q08554 894 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 GRIK3Q13003 919 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 NCAPH2Q6IBW4 605 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 CENPQQ7L2Z9 268 aaPredicted RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 NEK8Q86SG6 692 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 SLFN12Q8IYM2 578 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 SMG8Q8ND04 991 aaKnown RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 PJA1Q8NG27 643 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 KCNB2Q92953 911 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 ZNF707Q96C28 371 aaPredicted RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 RMDN1Q96DB5 314 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 CHST7Q9NS84 486 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 ADAM28Q9UKQ2 775 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 VAV3Q9UKW4 847 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 NUMBLQ9Y6R0 609 aa12.85□□□□□ -0.35
CMTM1-216ENST00000533078 MTCL1Q9Y4B5 1905 aaKnown RBP12.85□□□□□ -0.35
CMTM1-216ENST00000533078 ZMYM2Q9UBW7 1377 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 DOCK8Q8NF50 2099 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 LAMTOR5O43504 91 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 SLC37A4O43826 429 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 MAGEA9P43362 315 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 PTENP60484 403 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 PFKPQ01813 784 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 HTR4Q13639 388 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 PPM1LQ5SGD2 360 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 PDXDC1Q6P996 788 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 RNF168Q8IYW5 571 aaPredicted RBP12.84□□□□□ -0.35
CMTM1-216ENST00000533078 GPR161Q8N6U8 529 aaKnown RBP12.84□□□□□ -0.35
CMTM1-216ENST00000533078 CPB2Q96IY4 423 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 ZFP42Q96MM3 310 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 KCNMB3Q9NPA1 279 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 NCDNQ9UBB6 729 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 PARP2Q9UGN5 583 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 POLIQ9UNA4 740 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 HES2Q9Y543 173 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 CYP46A1Q9Y6A2 500 aa12.84□□□□□ -0.35
CMTM1-216ENST00000533078 ANHXE9PGG2 379 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 SPTLC1O15269 473 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 ZMYND10O75800 440 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 DGAT1O75907 488 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 HNRNPA1P09651 372 aaKnown RBP eCLIP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 EVCP57679 992 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 STARD6P59095 220 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 PRKCQQ04759 706 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 POU5F1BQ06416 359 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 ELAVL2Q12926 359 aaKnown RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 HSP90AA2PQ14568 343 aaPredicted RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 TMEM132AQ24JP5 1023 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 SLC27A1Q6PCB7 646 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 RUFY3Q7L099 469 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 TPH2Q8IWU9 490 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 ZNF579Q8NAF0 562 aaKnown RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 ATRIPQ8WXE1 791 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 ZNF274Q96GC6 653 aaPredicted RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 DYDC2Q96IM9 177 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 RNF39Q9H2S5 420 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 NXF3Q9H4D5 531 aaKnown RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 BRMS1Q9HCU9 246 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 SPATA6Q9NWH7 488 aaPredicted RBP12.83□□□□□ -0.36
CMTM1-216ENST00000533078 CDH7Q9ULB5 785 aa12.83□□□□□ -0.36
CMTM1-216ENST00000533078 MIA3Q5JRA6 1907 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 KANSL1LA0AUZ9 987 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 M0R2N6 131 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 NCAM2O15394 837 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 PAPLNO95428 1278 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 NPTXRO95502 500 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 AKAP5P24588 427 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 CYP4A11Q02928 519 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 UBXN2BQ14CS0 331 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 ZNF528Q3MIS6 628 aa12.82□□□□□ -0.36
CMTM1-216ENST00000533078 RSPO2Q6UXX9 243 aaPredicted RBP12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms