RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 PROZP22891 400 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 RNASELQ05823 741 aaKnown RBP16.51■□□□□ 0.23
CPSF1-208ENST00000532560 ZPBP2Q6X784 338 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 DYMQ7RTS9 669 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 FAM178BQ8IXR5 827 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 SPPL3Q8TCT6 385 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 DHX58Q96C10 678 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 GAD1Q99259 594 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 PYM1Q9BRP8 204 aaKnown RBP16.51■□□□□ 0.23
CPSF1-208ENST00000532560 TARS2Q9BW92 718 aaKnown RBP16.51■□□□□ 0.23
CPSF1-208ENST00000532560 APOL6Q9BWW8 343 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 ST6GALNAC4Q9H4F1 302 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 ZHX3Q9H4I2 956 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 NRDE2Q9H7Z3 1164 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 KBTBD4Q9NVX7 518 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 LZTS1Q9Y250 596 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 ABLIM1O14639 778 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 TOM1L1O75674 476 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 GAP43P17677 238 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 AKAP5P24588 427 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 ALDH7A1P49419 539 aaKnown RBP16.5■□□□□ 0.23
CPSF1-208ENST00000532560 AFF1P51825 1210 aaKnown RBP16.5■□□□□ 0.23
CPSF1-208ENST00000532560 BCAR1P56945 870 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 PLCB3Q01970 1234 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 CAMK1Q14012 370 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 CCDC85BQ15834 202 aaPredicted RBP16.5■□□□□ 0.23
CPSF1-208ENST00000532560 ZNF568Q3ZCX4 644 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 ADALQ6DHV7 355 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 MPZL3Q6UWV2 235 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 SFR1Q86XK3 245 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 SLC39A11Q8N1S5 342 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 ZFP42Q96MM3 310 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 LRRC27Q9C0I9 530 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 CDT1Q9H211 546 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 SPG21Q9NZD8 308 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 PARP2Q9UGN5 583 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 TCHHQ07283 1943 aa16.5■□□□□ 0.23
CPSF1-208ENST00000532560 POLR2DO15514 142 aaKnown RBP16.49■□□□□ 0.23
CPSF1-208ENST00000532560 B4GALT3O60512 393 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 RECQL4O94761 1208 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 POMCP01189 267 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 PIGRP01833 764 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 MCF2P10911 925 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 CMA1P23946 247 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 DNAJB1P25685 340 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 PBX3P40426 434 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 SCNN1GP51170 649 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 GTF2BQ00403 316 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 DSC1Q08554 894 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 GRIK3Q13003 919 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 ZNF280BQ86YH2 543 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 MAP4K3Q8IVH8 894 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 GSTCDQ8NEC7 633 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 POF1BQ8WVV4 589 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 PPM1EQ8WY54 764 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 MRPS27Q92552 414 aaKnown RBP16.49■□□□□ 0.23
CPSF1-208ENST00000532560 RPS6KC1Q96S38 1066 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 TMEM175Q9BSA9 504 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 TRIM9Q9C026 710 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 NSUN3Q9H649 340 aaKnown RBP16.49■□□□□ 0.23
CPSF1-208ENST00000532560 OLFML3Q9NRN5 406 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 SNTG2Q9NY99 539 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 KCNH3Q9ULD8 1083 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 CIZ1Q9ULV3 898 aaPredicted RBP16.49■□□□□ 0.23
CPSF1-208ENST00000532560 TBX20Q9UMR3 447 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 EYSQ5T1H1 3165 aa16.49■□□□□ 0.23
CPSF1-208ENST00000532560 PPP1R37O75864 691 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 DDHD2O94830 711 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 GALTP07902 379 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 NMT1P30419 496 aaKnown RBP16.48■□□□□ 0.23
CPSF1-208ENST00000532560 GRM5P41594 1212 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 SLC11A1P49279 550 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 AMPD3Q01432 767 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 NOLC1Q14978 699 aaKnown RBP eCLIP16.48■□□□□ 0.23
CPSF1-208ENST00000532560 CNNM4Q6P4Q7 775 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 HVCN1Q96D96 273 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 BICD1Q96G01 975 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 FAM193BQ96PV7 902 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-208ENST00000532560 GBP3Q9H0R5 595 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 TLR9Q9NR96 1032 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 ANKFY1Q9P2R3 1169 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 DNAJB4Q9UDY4 337 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 HPSEQ9Y251 543 aa16.48■□□□□ 0.23
CPSF1-208ENST00000532560 TDRD15B5MCY1 1934 aaKnown RBP16.48■□□□□ 0.23
CPSF1-208ENST00000532560 FAM237AA0A1B0GTK4 181 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 A0A1W2PQ27 194 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 A0A1W2PQ64 194 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 A0A1W2PQD8 194 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 HNRNPDLO14979 420 aaKnown RBP16.47■□□□□ 0.23
CPSF1-208ENST00000532560 IDEP14735 1019 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 PFKFB1P16118 471 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 KRT17Q04695 432 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 MCL1Q07820 350 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 PDE12Q6L8Q7 609 aaKnown RBP16.47■□□□□ 0.23
CPSF1-208ENST00000532560 ZNF720Q7Z2F6 126 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 TMEM173Q86WV6 379 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-208ENST00000532560 CCDC65Q8IXS2 484 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 COLGALT2Q8IYK4 626 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 TMEM169Q96HH4 297 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 IGSF21Q96ID5 467 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms