RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PMM2O15305 246 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 MMP13P45452 471 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 FMO1Q01740 532 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 SPP2Q13103 211 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CYP1B1Q16678 543 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 GKAP1Q5VSY0 366 aaPredicted RBP20.7■□□□□ 0.9
VPS28-213ENST00000530983 PAXIP1Q6ZW49 1069 aaPredicted RBP20.7■□□□□ 0.9
VPS28-213ENST00000530983 TMEM150BA6NC51 233 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 MMEP08473 750 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 GBP1P32455 592 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CDR1P51861 262 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CNTNAP1P78357 1384 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 RASA3Q14644 834 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 SIX1Q15475 284 aaPredicted RBP20.7■□□□□ 0.9
VPS28-213ENST00000530983 CHADLQ6NUI6 762 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CPLX4Q7Z7G2 160 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CDAN1Q8IWY9 1227 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 PPM1KQ8N3J5 372 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 MORC4Q8TE76 937 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 FAM151AQ8WW52 585 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 CHMP6Q96FZ7 201 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 JPH2Q9BR39 696 aaPredicted RBP20.7■□□□□ 0.9
VPS28-213ENST00000530983 CNOT7Q9UIV1 285 aaKnown RBP20.7■□□□□ 0.9
VPS28-213ENST00000530983 FEM1BQ9UK73 627 aa20.7■□□□□ 0.9
VPS28-213ENST00000530983 PSME4Q14997 1843 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 ZNF536O15090 1300 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 TLDC2A0PJX2 215 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 GOLGA8IPA6NC78 632 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 GOLGA8JA6NMD2 632 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 ANKRD63C9JTQ0 380 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 DNM1LO00429 736 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 CTNND1O60716 968 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 CHN1P15882 459 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 SMTNP53814 917 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 SLC13A5Q86YT5 568 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 ZNF564Q8TBZ8 553 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 SHC3Q92529 594 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 SEMA4DQ92854 862 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 NUP85Q9BW27 656 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 ST6GALNAC4Q9H4F1 302 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 AZI2Q9H6S1 392 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 A1CFQ9NQ94 594 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 NFIBO00712 420 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 SLC16A4O15374 487 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 CYP1A2P05177 515 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 CHRNA5P30532 468 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 QARSP47897 775 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 IFI35P80217 286 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 MAP2K1Q02750 393 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 TBC1D10BQ4KMP7 808 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 ANKRD20A8PQ5CZ79 823 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 C7orf43Q8WVR3 580 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 ATXN2LQ8WWM7 1075 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 ZNF317Q96PQ6 595 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 ACTR5Q9H9F9 607 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 AGO4Q9HCK5 861 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 GPRC5CQ9NQ84 441 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 ZNF70Q9UC06 446 aaPredicted RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 MTRF1LQ9UGC7 380 aaKnown RBP20.69■□□□□ 0.9
VPS28-213ENST00000530983 PARP2Q9UGN5 583 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 CCPG1Q9ULG6 757 aa20.69■□□□□ 0.9
VPS28-213ENST00000530983 SMIM23A6NLE4 172 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 RASSF9O75901 435 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 FGFR4P22455 802 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 COILP38432 576 aaPredicted RBP20.68■□□□□ 0.9
VPS28-213ENST00000530983 PTGER2P43116 358 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 TKFCQ3LXA3 575 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 CBWD2Q8IUF1 395 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 CD248Q9HCU0 757 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 PTPN22Q9Y2R2 807 aa20.68■□□□□ 0.9
VPS28-213ENST00000530983 GOLGA6L7A0A1B0GV03 622 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 RGS16O15492 202 aaPredicted RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 SPOPO43791 374 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 ICAM1P05362 532 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 RARAP10276 462 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 CHRM1P11229 460 aaPredicted RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 YWHABP31946 246 aaKnown RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 PEX3P56589 373 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 MCCD1P59942 119 aaPredicted RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 NIPA1Q7RTP0 329 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 RPAINQ86UA6 219 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 CCDC105Q8IYK2 499 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 ART4Q93070 314 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 SELENOSQ9BQE4 189 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 LYPLA2O95372 231 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 ADSSP30520 456 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 CAP2P40123 477 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 NCKAP1LP55160 1127 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 MRPS9P82933 396 aaKnown RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 TNIP1Q15025 636 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 UGCGQ16739 394 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 UHMK1Q8TAS1 419 aaKnown RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 EPS8L3Q8TE67 593 aaKnown RBP20.67■□□□□ 0.9
VPS28-213ENST00000530983 CLEC4DQ8WXI8 215 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 ZNF653Q96CK0 615 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 GTF3C4Q9UKN8 822 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 UBIAD1Q9Y5Z9 338 aa20.67■□□□□ 0.9
VPS28-213ENST00000530983 ASTN2O75129 1339 aaPredicted RBP20.66■□□□□ 0.9
VPS28-213ENST00000530983 RIPK2O43353 540 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 CYP11B1P15538 503 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms