RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NFIXQ14938 502 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 SEPT2Q15019 361 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 SURF1Q15526 300 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 KIAA0753Q2KHM9 967 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 BORAQ6PGQ7 559 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 USP45Q70EL2 814 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 OTOP2Q7RTS6 562 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 PLEKHH3Q7Z736 793 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 REXO1L1PQ8IX06 675 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 THEMISQ8N1K5 641 aaPredicted RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 TXNDC5Q8NBS9 432 aaKnown RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 FAM156AQ8NDB6 213 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 REPS2Q8NFH8 660 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 NRG4Q8WWG1 115 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 GAB3Q8WWW8 586 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 AUTS2Q8WXX7 1259 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 COA7Q96BR5 231 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 MVB12AQ96EY5 273 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 YTHDC1Q96MU7 727 aaKnown RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 BTBD2Q9BX70 525 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 KRTAP9-8Q9BYQ0 159 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 WNT8AQ9H1J5 351 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 LDAHQ9H6V9 325 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 MSL2Q9HCI7 577 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 GNL3LQ9NVN8 582 aaKnown RBP4.06□□□□□ -1.76
CD44-229ENST00000528672 FTSJ1Q9UET6 329 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 DENND2AQ9ULE3 1009 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 DMTF1Q9Y222 760 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 PCDHA13Q9Y5I0 950 aa4.06□□□□□ -1.76
CD44-229ENST00000528672 A0A0A6YYJ9 748 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 A0A0G2JLL6 359 aaPredicted RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 FAM227AF5H4B4 570 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 H3BML4 177 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PQBP1O60828 265 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 TUSC2O75896 110 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 FGAP02671 866 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 SETSIPP0DME0 302 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 APEX1P27695 318 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 ADSLP30566 484 aaPredicted RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 TRAPPC10P48553 1259 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 FAM193AP78312 1265 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 STK3Q13188 491 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PCOLCEQ15113 449 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 LONRF1Q17RB8 773 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 MUM1Q2TAK8 710 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PGS1Q32NB8 556 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 MBNL2Q5VZF2 373 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 ANO1Q5XXA6 986 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 ERAP2Q6P179 960 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 DARS2Q6PI48 645 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 LMBR1LQ6UX01 489 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 CXXC5Q7LFL8 322 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 OVCH2Q7RTZ1 564 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 DENND1CQ8IV53 801 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 LGI4Q8N135 537 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PRR18Q8N4B5 295 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 KLHL36Q8N4N3 616 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 MYRIPQ8NFW9 859 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 OR14K1Q8NGZ2 314 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PPP1R35Q8TAP8 253 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 STON2Q8WXE9 905 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 NKD2Q969F2 451 aaPredicted RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 MBD6Q96DN6 1003 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 LCORQ96JN0 433 aaPredicted RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 NAP1L4Q99733 375 aaKnown RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 ANP32EQ9BTT0 268 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 PITHD1Q9GZP4 211 aaPredicted RBP4.05□□□□□ -1.76
CD44-229ENST00000528672 MAF1Q9H063 256 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 TMEM60Q9H2L4 133 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 IFT122Q9HBG6 1241 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 USP40Q9NVE5 1235 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 ING3Q9NXR8 418 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 ZDHHC9Q9Y397 364 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 CDY2AQ9Y6F7 541 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 DUSP10Q9Y6W6 482 aa4.05□□□□□ -1.76
CD44-229ENST00000528672 ST20-MTHFSA0A0A6YYL1 179 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 MROH6A6NGR9 719 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 OTOL1A6NHN0 477 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 TBX3O15119 743 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 CUTAO60888 179 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 STC2O76061 302 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 UBXN7O94888 489 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 SLC5A1P13866 664 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 ZKSCAN1P17029 563 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 CSF2RBP32927 897 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 PPM1FP49593 454 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 ALDH5A1P51649 535 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 BCAR1P56945 870 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 TOP3AQ13472 1001 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 RNF151Q2KHN1 245 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 TMEM95Q3KNT9 176 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 GRAMD4Q6IC98 578 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 DPP8Q6V1X1 898 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 Q6ZVL8 140 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 SKAP1Q86WV1 359 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 LILRA3Q8N6C8 439 aaPredicted RBP4.04□□□□□ -1.76
CD44-229ENST00000528672 ANKRD42Q8N9B4 389 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 FEZF2Q8TBJ5 459 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 DYDC2Q96IM9 177 aa4.04□□□□□ -1.76
CD44-229ENST00000528672 HERPUD2Q9BSE4 406 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms