RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PPME1Q9Y570 386 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 FAM208BQ5VWN6 2430 aa11.75□□□□□ -0.53
CPSF1-203ENST00000527916 KANSL1LA0AUZ9 987 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 POTEMA6NI47 508 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 ANHXE9PGG2 379 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 TEX28O15482 410 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 CCNT1O60563 726 aaKnown RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 RFPL2O75678 378 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 LARGE1O95461 756 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 C1RP00736 705 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 P4HBP07237 508 aaKnown RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 KRT2P35908 639 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 QARSP47897 775 aaKnown RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 HTR4Q13639 388 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 POTEGQ6S5H5 508 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 PIK3AP1Q6ZUJ8 805 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 GET4Q7L5D6 327 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 CATSPER4Q7RTX7 472 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 ZNF410Q86VK4 478 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 SLFN12Q8IYM2 578 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 MAML2Q8IZL2 1156 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 NSUN7Q8NE18 718 aaKnown RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 HAS1Q92839 578 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 CHAMP1Q96JM3 812 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 JPH2Q9BR39 696 aaPredicted RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 ZSCAN32Q9NX65 697 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 ZDHHC7Q9NXF8 308 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 VAV3Q9UKW4 847 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 USP18Q9UMW8 372 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 SMG5Q9UPR3 1016 aaKnown RBP11.74□□□□□ -0.53
CPSF1-203ENST00000527916 NUMBLQ9Y6R0 609 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 CNTNAP2Q9UHC6 1331 aa11.74□□□□□ -0.53
CPSF1-203ENST00000527916 A0A087WZ62 844 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 DCDC2BA2VCK2 349 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 MEIS3P2A8K0S8 358 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 DDX11L8A8MPP1 907 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 EML1O00423 815 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 NRP1O14786 923 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 TBC1D4O60343 1298 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 MAFO75444 373 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 BAG4O95429 457 aaKnown RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 ADRB1P08588 477 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 GLUD2P49448 558 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 PRKCQQ04759 706 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 CSTF1Q05048 431 aaKnown RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 EPHA7Q15375 998 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 MTERF2Q49AM1 385 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 EARS2Q5JPH6 523 aaKnown RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 ANO5Q75V66 913 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 C4orf19Q8IY42 314 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 FDXACB1Q9BRP7 624 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 HERC2P3Q9BVR0 1158 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 OSBPL6Q9BZF3 934 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 EPC1Q9H2F5 836 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 SEPT9Q9UHD8 586 aaPredicted RBP11.73□□□□□ -0.53
CPSF1-203ENST00000527916 GMEB2Q9UKD1 530 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 LIMCH1Q9UPQ0 1083 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 PCDHB2Q9Y5E7 798 aa11.73□□□□□ -0.53
CPSF1-203ENST00000527916 MTCL1Q9Y4B5 1905 aaKnown RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 FAM170BA6NMN3 283 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 GAS2O43903 313 aaKnown RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 LRRN2O75325 713 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 NR1I2O75469 434 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 DDHD2O94830 711 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 PAPLNO95428 1278 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 MYBP10242 640 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 GPC5P78333 572 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 PFKPQ01813 784 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 NR5A1Q13285 461 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 SNW1Q13573 536 aaKnown RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 TRIM29Q14134 588 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 UBXN2BQ14CS0 331 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 RSPO2Q6UXX9 243 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 MTSS1LQ765P7 747 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 ZBTB44Q8NCP5 570 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 ZNF707Q96C28 371 aaPredicted RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 NELL2Q99435 816 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 LLPHQ9BRT6 129 aaKnown RBP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 PRKD2Q9BZL6 878 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 NT5C3AQ9H0P0 336 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 RSAD1Q9HA92 442 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 RXFP1Q9HBX9 757 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 UBN1Q9NPG3 1134 aa11.72□□□□□ -0.53
CPSF1-203ENST00000527916 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.72□□□□□ -0.53
CPSF1-203ENST00000527916 BTBD18B2RXH4 712 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 NCAM2O15394 837 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 MARCH6O60337 910 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 B4GALT3O60512 393 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 JAK2O60674 1132 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 POMCP01189 267 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 SPATA31D3P0C874 917 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 FSHRP23945 695 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 DSG1Q02413 1049 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 CREMQ03060 361 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 SPIRE1Q08AE8 756 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 DRP2Q13474 957 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 MLF2Q15773 248 aaPredicted RBP11.71□□□□□ -0.53
CPSF1-203ENST00000527916 ZBTB41Q5SVQ8 909 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 AGMOQ6ZNB7 445 aa11.71□□□□□ -0.53
CPSF1-203ENST00000527916 SPATA31D4Q6ZUB0 917 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms