RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 TMEM62Q0P6H9 643 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 FAM47CQ5HY64 1035 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 MPZL3Q6UWV2 235 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 ZNF397Q8NF99 534 aaPredicted RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 PLEKHO2Q8TD55 490 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 PARD3BQ8TEW8 1205 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 CCDC127Q96BQ5 260 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 EDEM3Q9BZQ6 932 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 PTPRHQ9HD43 1115 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 TULP1O00294 542 aaPredicted RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 CSDE1O75534 798 aaKnown RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 HARSP12081 509 aaKnown RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 PROZP22891 400 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 ACOT2P49753 483 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 ZBED6P86452 979 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 LHX8Q68G74 356 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 SESTD1Q86VW0 696 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 BAG1Q99933 345 aaPredicted RBP22.86■■□□□ 1.25
VPS28-208ENST00000527797 GINS2Q9Y248 185 aa22.86■■□□□ 1.25
VPS28-208ENST00000527797 CNTNAP2Q9UHC6 1331 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 ABLIM1O14639 778 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 P4HA2O15460 535 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 ERLIN2O94905 339 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 MYL7Q01449 175 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 CETN1Q12798 172 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 NOLC1Q14978 699 aaKnown RBP eCLIP22.85■■□□□ 1.25
VPS28-208ENST00000527797 AMHR2Q16671 573 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 C1orf220Q5T0J3 134 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 CRELD2Q6UXH1 353 aaPredicted RBP22.85■■□□□ 1.25
VPS28-208ENST00000527797 OR8K1Q8NGG5 319 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 SH3TC2Q8TF17 1288 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 VTI1AQ96AJ9 217 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 TSEN34Q9BSV6 310 aaKnown RBP22.85■■□□□ 1.25
VPS28-208ENST00000527797 ABHD10Q9NUJ1 306 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 AGPAT5Q9NUQ2 364 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 PYCARDQ9ULZ3 195 aa22.85■■□□□ 1.25
VPS28-208ENST00000527797 EVPLQ92817 2033 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 MOXD2PA6NHM9 499 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 EPHB6O15197 1021 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 OGTO15294 1046 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 PON1P27169 355 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 ACLYP53396 1101 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 PPP3CAQ08209 521 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 PSMD6Q15008 389 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 TSR1Q2NL82 804 aaKnown RBP22.84■■□□□ 1.25
VPS28-208ENST00000527797 CBWD6Q4V339 395 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 CBWD3Q5JTY5 395 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 CBWD5Q5RIA9 395 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 GDF6Q6KF10 455 aaPredicted RBP22.84■■□□□ 1.25
VPS28-208ENST00000527797 NAA15Q9BXJ9 866 aaKnown RBP22.84■■□□□ 1.25
VPS28-208ENST00000527797 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.84■■□□□ 1.253e-6■■□□□ 14.1
VPS28-208ENST00000527797 PLCB1Q9NQ66 1216 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 GCNT4Q9P109 453 aa22.84■■□□□ 1.25
VPS28-208ENST00000527797 KAT6AQ92794 2004 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 LRRIQ3A6PVS8 624 aaPredicted RBP22.83■■□□□ 1.25
VPS28-208ENST00000527797 SLC9A1P19634 815 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 GTF2H1P32780 548 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 PCBP1Q15365 356 aaKnown RBP eCLIP22.83■■□□□ 1.25
VPS28-208ENST00000527797 ZNF568Q3ZCX4 644 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 CACNA2D4Q7Z3S7 1137 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 ARRDC4Q8NCT1 418 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 DNAJC7Q99615 494 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 OSMRQ99650 979 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 CDHR5Q9HBB8 845 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 RBAKQ9NYW8 714 aaPredicted RBP22.83■■□□□ 1.25
VPS28-208ENST00000527797 CEP72Q9P209 647 aa22.83■■□□□ 1.25
VPS28-208ENST00000527797 PMM2O15305 246 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 TSPAN1O60635 241 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 DARSP14868 501 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 GCLMP48507 274 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 NCBP1Q09161 790 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 EEF1DP3Q658K8 133 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 RSPH3Q86UC2 560 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 TMEM139Q8IV31 216 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 FNBP1Q96RU3 617 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 NOL4O94818 638 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 RPLP2P05387 115 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 DLATP10515 647 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 ARF4P18085 180 aaPredicted RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 EIF4BP23588 611 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 MXI1P50539 228 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 CRYBB1P53674 252 aaPredicted RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 ITGA7Q13683 1181 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 ZBTB41Q5SVQ8 909 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 KIAA1524Q8TCG1 905 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 GLT1D1Q96MS3 346 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 POP1Q99575 1024 aaKnown RBP22.82■■□□□ 1.24
VPS28-208ENST00000527797 TMEM117Q9H0C3 514 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 CDT1Q9H211 546 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 PDZD7Q9H5P4 517 aa22.82■■□□□ 1.24
VPS28-208ENST00000527797 M0QZ92 97 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 GRIN2DO15399 1336 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 FAM189A1O60320 539 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 MCF2P10911 925 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 ACTN1P12814 892 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 POLR2FP61218 127 aaKnown RBP22.81■■□□□ 1.24
VPS28-208ENST00000527797 PTPN11Q06124 597 aaPredicted RBP22.81■■□□□ 1.24
VPS28-208ENST00000527797 SEZ6Q53EL9 994 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 KLHDC7AQ5VTJ3 777 aa22.81■■□□□ 1.24
VPS28-208ENST00000527797 KRT39Q6A163 491 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms