RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 HTTP42858 3142 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 CYP2C9P11712 490 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 PTENP60484 403 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 MAPK6Q16659 721 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 SLC35C1Q96A29 364 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 MKNK1Q9BUB5 465 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 HNRNPDLO14979 420 aaKnown RBP20.53■□□□□ 0.88
VPS28-207ENST00000526977 PIGRP01833 764 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 GJB1P08034 283 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 PHKA2P46019 1235 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 POLR2FP61218 127 aaKnown RBP20.53■□□□□ 0.88
VPS28-207ENST00000526977 NCBP1Q09161 790 aaKnown RBP20.53■□□□□ 0.88
VPS28-207ENST00000526977 ZNF662Q6ZS27 426 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 SESTD1Q86VW0 696 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 IFNLR1Q8IU57 520 aaPredicted RBP20.53■□□□□ 0.88
VPS28-207ENST00000526977 FAM186BQ8IYM0 893 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 BICD1Q96G01 975 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 GTF2IRD1Q9UHL9 959 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 FRMD4BQ9Y2L6 1034 aa20.53■□□□□ 0.88
VPS28-207ENST00000526977 ACLYP53396 1101 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 DCAF17Q5H9S7 520 aaPredicted RBP20.52■□□□□ 0.88
VPS28-207ENST00000526977 ZNF410Q86VK4 478 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 NME8Q8N427 588 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 SYN2Q92777 582 aaPredicted RBP20.52■□□□□ 0.88
VPS28-207ENST00000526977 CCDC113Q9H0I3 377 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 NUCKS1Q9H1E3 243 aaKnown RBP20.52■□□□□ 0.88
VPS28-207ENST00000526977 GANQ9H2C0 597 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 HAUS4Q9H6D7 363 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 IFT122Q9HBG6 1241 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 TRIM10Q9UDY6 481 aa20.52■□□□□ 0.88
VPS28-207ENST00000526977 ZNF263O14978 683 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 TREHO43280 583 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 VTNP04004 478 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 SLC9A1P19634 815 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 EIF4A3P38919 411 aaKnown RBP20.51■□□□□ 0.87
VPS28-207ENST00000526977 LIG4P49917 911 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 HIC1Q14526 733 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 TCERG1LQ5VWI1 586 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 TAF2Q6P1X5 1199 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 FZD8Q9H461 694 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 MYO1AQ9UBC5 1043 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 TFR2Q9UP52 801 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 EVPLQ92817 2033 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 ANKRD63C9JTQ0 380 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 EXOC3O60645 756 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 GARTP22102 1010 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 PON1P27169 355 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 CYP2J2P51589 502 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 GPC3P51654 580 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 CYP27A1Q02318 531 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 HGSNATQ68CP4 663 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 SLFN12LQ6IEE8 588 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 ZPBP2Q6X784 338 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 CTU1Q7Z7A3 348 aaKnown RBP20.51■□□□□ 0.87
VPS28-207ENST00000526977 SLC35F6Q8N357 371 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 LRRN4CLQ8ND94 238 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 PPP1R13LQ8WUF5 828 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 ANKRD7Q92527 254 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 GLT1D1Q96MS3 346 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 PLCB1Q9NQ66 1216 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 PAK6Q9NQU5 681 aaPredicted RBP20.51■□□□□ 0.87
VPS28-207ENST00000526977 GUCA1BQ9UMX6 200 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 SCN10AQ9Y5Y9 1956 aa20.51■□□□□ 0.87
VPS28-207ENST00000526977 A0A087WZ62 844 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 RCCD1A6NED2 376 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 HSPA8P11142 646 aaKnown RBP20.5■□□□□ 0.87
VPS28-207ENST00000526977 ACTN1P12814 892 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 ADSSP30520 456 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 NLRP11P59045 1033 aaKnown RBP20.5■□□□□ 0.87
VPS28-207ENST00000526977 EXOC3L4Q17RC7 722 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 XXYLT1Q8NBI6 393 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 NLRP7Q8WX94 980 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 FDXACB1Q9BRP7 624 aaPredicted RBP20.5■□□□□ 0.87
VPS28-207ENST00000526977 CBWD1Q9BRT8 395 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 MRPL4Q9BYD3 311 aaKnown RBP20.5■□□□□ 0.87
VPS28-207ENST00000526977 UNC93B1Q9H1C4 597 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 HSPBP1Q9NZL4 362 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 STYXL1Q9Y6J8 313 aa20.5■□□□□ 0.87
VPS28-207ENST00000526977 INO80B-WBP1J3KQ70 363 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 ACKR2O00590 384 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 KIAA0391O15091 583 aaKnown RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 IPO7O95373 1038 aaKnown RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 LCA5LO95447 670 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 RPLP2P05387 115 aaKnown RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 PRKCBP05771 671 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 HSP90AA2PQ14568 343 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 ASTE1Q2TB18 679 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 SFMBT2Q5VUG0 894 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 SRGAP1Q7Z6B7 1085 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 KIAA1328Q86T90 577 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 GPIHBP1Q8IV16 184 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 POMGNT1Q8WZA1 660 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 VTI1AQ96AJ9 217 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 INO80BQ9C086 356 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 LACRTQ9GZZ8 138 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 FAM49AQ9H0Q0 323 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 PRMT7Q9NVM4 692 aaPredicted RBP20.49■□□□□ 0.87
VPS28-207ENST00000526977 TISP43B9A030 160 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 MAPK13O15264 365 aa20.49■□□□□ 0.87
VPS28-207ENST00000526977 KIF11P52732 1056 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms