RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 STRN3Q13033 797 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 PSMD6Q15008 389 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 LY6KQ17RY6 165 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 GLE1Q53GS7 698 aaKnown RBP17.21■□□□□ 0.35
USH1C-204ENST00000526313 CCDC62Q6P9F0 684 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 SYCE1Q8N0S2 351 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 SHCBP1Q8NEM2 672 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 SLC20A1Q8WUM9 679 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 FAM167AQ96KS9 214 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 FAM213AQ9BRX8 229 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 LRRC1Q9BTT6 524 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 TOPORSQ9NS56 1045 aaPredicted RBP17.21■□□□□ 0.35
USH1C-204ENST00000526313 TAS2R14Q9NYV8 317 aa17.21■□□□□ 0.35
USH1C-204ENST00000526313 PACSIN2Q9UNF0 486 aaPredicted RBP17.21■□□□□ 0.35
USH1C-204ENST00000526313 ZC3H11AO75152 810 aaKnown RBP eCLIP17.2■□□□□ 0.34
USH1C-204ENST00000526313 PGK2P07205 417 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 GZMAP12544 262 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 CHRNB2P17787 502 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 GABPB1Q06547 395 aaPredicted RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 CELF3Q5SZQ8 465 aaKnown RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 SLFN12LQ6IEE8 588 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 CCDC70Q6NSX1 233 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 CRELD2Q6UXH1 353 aaPredicted RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 NT5DC3Q86UY8 548 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 SLC35G2Q8TBE7 412 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 EPS8L1Q8TE68 723 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 ZNF516Q92618 1163 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 BICD1Q96G01 975 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 CALR3Q96L12 384 aaKnown RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 MMP19Q99542 508 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 GPR20Q99678 358 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 HAPLN2Q9GZV7 340 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 RBM12Q9NTZ6 932 aaKnown RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 ZC3H4Q9UPT8 1303 aaKnown RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 GLTPD2A6NH11 291 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 UNCXA6NJT0 531 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 K7ERI5 159 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 KCTD2Q14681 263 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 PLPPR4Q7Z2D5 763 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 DEPTORQ8TB45 409 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 CTNNBL1Q8WYA6 563 aaPredicted RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 HES6Q96HZ4 224 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 NT5C1BQ96P26 610 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 TAF1DQ9H5J8 278 aaPredicted RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 SUGCTQ9HAC7 445 aa17.2■□□□□ 0.34
USH1C-204ENST00000526313 RNF216Q9NWF9 866 aaPredicted RBP17.2■□□□□ 0.34
USH1C-204ENST00000526313 SCN4AP35499 1836 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 ZNFX1Q9P2E3 1918 aaKnown RBP17.19■□□□□ 0.34
USH1C-204ENST00000526313 ADCY3O60266 1144 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 GCNT1Q02742 428 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 SMC1AQ14683 1233 aaKnown RBP17.19■□□□□ 0.34
USH1C-204ENST00000526313 CASP8Q14790 479 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 MAP9Q49MG5 647 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 ENOSF1Q7L5Y1 443 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 PPM1KQ8N3J5 372 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 ACTRT1Q8TDG2 376 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 HDAC7Q8WUI4 952 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 BBXQ8WY36 941 aaPredicted RBP17.19■□□□□ 0.34
USH1C-204ENST00000526313 TAF4BQ92750 862 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 DMGDHQ9UI17 866 aaKnown RBP17.19■□□□□ 0.34
USH1C-204ENST00000526313 AGO2Q9UKV8 859 aaKnown RBP17.19■□□□□ 0.34
USH1C-204ENST00000526313 ADGRA2Q96PE1 1338 aa17.19■□□□□ 0.34
USH1C-204ENST00000526313 A0A0B4J269 797 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 IGKV6-21A0A0C4DH24 114 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 SGPL1O95470 568 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 C4BPAP04003 597 aaKnown RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 ERVK-9P63128 1117 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 SNAPC2Q13487 334 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 CAPSQ13938 189 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 ZACNQ401N2 412 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 EEPD1Q7L9B9 569 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 NOP9Q86U38 636 aaKnown RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 RPUSD2Q8IZ73 545 aaKnown RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 USP38Q8NB14 1042 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 ARHGEF26Q96DR7 871 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 FAM81BQ96LP2 452 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 PCDHB18PQ96TA0 734 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 GOLPH3Q9H4A6 298 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 VIPAS39Q9H9C1 493 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 OSGEPQ9NPF4 335 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 LRRIQ4A6NIV6 560 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 TMCO5BA8MYB1 307 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 ZBTB42B2RXF5 422 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 CYP26A1O43174 497 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 BUB1BO60566 1050 aaPredicted RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 RTN2O75298 545 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 DLATP10515 647 aaKnown RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 TNFRSF8P28908 595 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 NLRP11P59045 1033 aaKnown RBP17.18■□□□□ 0.34
USH1C-204ENST00000526313 HSDL1Q3SXM5 330 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 IER5Q5VY09 327 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 PEX26Q7Z412 305 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 RASGEF1CQ8N431 466 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 METTL13Q8N6R0 699 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 SCFD2Q8WU76 684 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 THAP2Q9H0W7 228 aa17.18■□□□□ 0.34
USH1C-204ENST00000526313 KCNK3O14649 394 aa17.17■□□□□ 0.34
USH1C-204ENST00000526313 GAS2O43903 313 aaKnown RBP17.17■□□□□ 0.34
USH1C-204ENST00000526313 LDHAP00338 332 aaKnown RBP17.17■□□□□ 0.34
USH1C-204ENST00000526313 EDN1P05305 212 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms