RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 TLL1O43897 1013 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 PRPF6O94906 941 aaKnown RBP22.71■■□□□ 1.23
CD44-222ENST00000526025 UPP2O95045 317 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 KCNA1Q09470 495 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 COBLL1Q53SF7 1204 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 SLC39A4Q6P5W5 647 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 CDR2LQ86X02 465 aaPredicted RBP22.71■■□□□ 1.23
CD44-222ENST00000526025 CMTR2Q8IYT2 770 aaKnown RBP22.71■■□□□ 1.23
CD44-222ENST00000526025 GLIS3Q8NEA6 775 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 TMEM117Q9H0C3 514 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 RNF19AQ9NV58 838 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 CGNQ9P2M7 1197 aaKnown RBP22.71■■□□□ 1.23
CD44-222ENST00000526025 GIT1Q9Y2X7 761 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 LAMA3Q16787 3333 aa22.71■■□□□ 1.23
CD44-222ENST00000526025 TDRD15B5MCY1 1934 aaKnown RBP22.7■■□□□ 1.23
CD44-222ENST00000526025 TRIP11Q15643 1979 aa22.7■■□□□ 1.23
CD44-222ENST00000526025 ITGA4P13612 1032 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 HOXD13P35453 343 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 GRM5P41594 1212 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 AGMOQ6ZNB7 445 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 TMCO2Q7Z6W1 182 aaPredicted RBP22.7■■□□□ 1.22
CD44-222ENST00000526025 SYCP3Q8IZU3 236 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 YME1L1Q96TA2 773 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 TCHPQ9BT92 498 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 PBX4Q9BYU1 374 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 GBP3Q9H0R5 595 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 NXF3Q9H4D5 531 aaKnown RBP22.7■■□□□ 1.22
CD44-222ENST00000526025 ANKFY1Q9P2R3 1169 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 MSRAQ9UJ68 235 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 PDCD11Q14690 1871 aaKnown RBP22.7■■□□□ 1.22
CD44-222ENST00000526025 NLRC5Q86WI3 1866 aa22.7■■□□□ 1.22
CD44-222ENST00000526025 A0A0B4J269 797 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 GRXCR1A8MXD5 290 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 KIAA0391O15091 583 aaKnown RBP22.69■■□□□ 1.22
CD44-222ENST00000526025 GARTP22102 1010 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 POU5F1Q01860 360 aaKnown RBP22.69■■□□□ 1.22
CD44-222ENST00000526025 CLLU1OSQ5K130 101 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 ZNF658Q5TYW1 1059 aaPredicted RBP22.69■■□□□ 1.22
CD44-222ENST00000526025 GLB1LQ6UWU2 654 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 GUF1Q8N442 669 aaKnown RBP22.69■■□□□ 1.22
CD44-222ENST00000526025 TRIML1Q8N9V2 468 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 TMEM174Q8WUU8 243 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 ZBTB45Q96K62 511 aaPredicted RBP22.69■■□□□ 1.22
CD44-222ENST00000526025 NUP62CLQ9H1M0 184 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 RSAD1Q9HA92 442 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 KIAA1468Q9P260 1216 aa22.69■■□□□ 1.22
CD44-222ENST00000526025 KIAA1671Q9BY89 1806 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 TMEM265A0A087WTH1 108 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 ANKRD63C9JTQ0 380 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 RABGGTBP53611 331 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 KNOP1Q1ED39 458 aaKnown RBP22.68■■□□□ 1.22
CD44-222ENST00000526025 HABP4Q5JVS0 413 aaKnown RBP22.68■■□□□ 1.22
CD44-222ENST00000526025 FAM117BQ6P1L5 589 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 ABI1Q8IZP0 508 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 RNF169Q8NCN4 708 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 GOLGA5Q8TBA6 731 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 CCDC94Q9BW85 323 aaPredicted RBP22.68■■□□□ 1.22
CD44-222ENST00000526025 MRPL9Q9BYD2 267 aaKnown RBP22.68■■□□□ 1.22
CD44-222ENST00000526025 HES2Q9Y543 173 aa22.68■■□□□ 1.22
CD44-222ENST00000526025 LAMA2P24043 3122 aaKnown RBP22.67■■□□□ 1.22
CD44-222ENST00000526025 OGTO15294 1046 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 FAM189A1O60320 539 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 OFD1O75665 1012 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 FGFR1P11362 822 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 PPP1R2P41236 205 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 GPR153Q6NV75 609 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 HS2ST1Q7LGA3 356 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 ZBTB33Q86T24 672 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 C12orf56Q8IXR9 622 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 LPPQ93052 612 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 CASD1Q96PB1 797 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 HAPLN2Q9GZV7 340 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 RNF39Q9H2S5 420 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 MAN1B1Q9UKM7 699 aa22.67■■□□□ 1.22
CD44-222ENST00000526025 ANK1P16157 1881 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 MEIS3P2A8K0S8 358 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 TGFB1I1O43294 461 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 DNAJB2P25686 324 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 ADSSP30520 456 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 MATR3P43243 847 aaKnown RBP eCLIP22.66■■□□□ 1.22
CD44-222ENST00000526025 HSP90AA2PQ14568 343 aaPredicted RBP22.66■■□□□ 1.22
CD44-222ENST00000526025 CAMK4Q16566 473 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 LRRC43Q8N309 656 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 POMGNT1Q8WZA1 660 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 ERCC4Q92889 916 aaPredicted RBP22.66■■□□□ 1.22
CD44-222ENST00000526025 MSTO1Q9BUK6 570 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 TOPORSQ9NS56 1045 aaPredicted RBP22.66■■□□□ 1.22
CD44-222ENST00000526025 TYW1Q9NV66 732 aaKnown RBP22.66■■□□□ 1.22
CD44-222ENST00000526025 KANSL3Q9P2N6 904 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 GDAQ9Y2T3 454 aa22.66■■□□□ 1.22
CD44-222ENST00000526025 YBX2Q9Y2T7 364 aaKnown RBP22.66■■□□□ 1.22
CD44-222ENST00000526025 CARNS1A5YM72 827 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 TBKBP1A7MCY6 615 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 PDXKO00764 312 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 RECQL4O94761 1208 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 LDHAP00338 332 aaKnown RBP22.65■■□□□ 1.22
CD44-222ENST00000526025 CLTAP09496 248 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 PBX2P40425 430 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 MORC3Q14149 939 aa22.65■■□□□ 1.22
CD44-222ENST00000526025 BTG3Q14201 252 aaPredicted RBP22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms