RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 TTLL7Q6ZT98 887 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 C1QL4Q86Z23 238 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 TMEM151BQ8IW70 566 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 STAG1Q8WVM7 1258 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 MYL10Q9BUA6 226 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 IRF2BPLQ9H1B7 796 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 POFUT1Q9H488 388 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 NTMQ9P121 344 aa8.87□□□□□ -0.99
SDCBP-208ENST00000520228 A0A1B0GTL3 188 aa8.86□□□□□ -0.99
SDCBP-208ENST00000520228 RNMTO43148 476 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 NUAK1O60285 661 aa8.86□□□□□ -0.99
SDCBP-208ENST00000520228 PRPF6O94906 941 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 APEX1P27695 318 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 ADGRG2Q8IZP9 1017 aa8.86□□□□□ -0.99
SDCBP-208ENST00000520228 CARFQ8N187 725 aa8.86□□□□□ -0.99
SDCBP-208ENST00000520228 YTHDC1Q96MU7 727 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 PNNQ9H307 717 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 NOC2LQ9Y3T9 749 aaKnown RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 SRCAPQ6ZRS2 3230 aa8.86□□□□□ -0.99
SDCBP-208ENST00000520228 KDM6AO15550 1401 aaPredicted RBP8.86□□□□□ -0.99
SDCBP-208ENST00000520228 NHSQ6T4R5 1651 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 KDM1AO60341 852 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 RAB11FIP3O75154 756 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 CFPP27918 469 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 SARSP49591 514 aaKnown RBP8.85□□□□□ -0.99
SDCBP-208ENST00000520228 CD83Q01151 205 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 MTMR1Q13613 665 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 ZNF827Q17R98 1081 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 ZBTB41Q5SVQ8 909 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 CIAPIN1Q6FI81 312 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 KIAA1841Q6NSI8 718 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 ESPNLQ6ZVH7 1005 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 CXorf67Q86X51 503 aaPredicted RBP8.85□□□□□ -0.99
SDCBP-208ENST00000520228 CNTD1Q8N815 330 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 MENTQ9BUN1 341 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 HOMER2Q9NSB8 354 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 TYW1Q9NV66 732 aaKnown RBP8.85□□□□□ -0.99
SDCBP-208ENST00000520228 TFCP2L1Q9NZI6 479 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 MAP3K5Q99683 1374 aa8.85□□□□□ -0.99
SDCBP-208ENST00000520228 DBX1A6NMT0 343 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 H0Y858 1186 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 DDX3XO00571 662 aaKnown RBP eCLIP8.84□□□□□ -0.99
SDCBP-208ENST00000520228 WDR43Q15061 677 aaKnown RBP eCLIP8.84□□□□□ -0.99
SDCBP-208ENST00000520228 VMACQ2NL98 169 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 TCERG1LQ5VWI1 586 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 PRAMEF9Q5VWM5 478 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 TIGD7Q6NT04 549 aaPredicted RBP8.84□□□□□ -0.99
SDCBP-208ENST00000520228 TRMT10BQ6PF06 316 aaKnown RBP8.84□□□□□ -0.99
SDCBP-208ENST00000520228 UNQ6494/PRO21346Q6UXR6 183 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 PKD1L3Q7Z443 1732 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 IL17REQ8NFR9 667 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 LMBR1Q8WVP7 490 aa8.84□□□□□ -0.99
SDCBP-208ENST00000520228 PITHD1Q9GZP4 211 aaPredicted RBP8.84□□□□□ -0.99
SDCBP-208ENST00000520228 ANP32CO43423 234 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 KATNA1O75449 491 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 MANFP55145 182 aaKnown RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 ADCY2Q08462 1091 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 TEFQ10587 303 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 NOLC1Q14978 699 aaKnown RBP eCLIP8.83□□□□□ -1
SDCBP-208ENST00000520228 INAVAQ3KP66 663 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 BRDTQ58F21 947 aaPredicted RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 TMEM200BQ69YZ2 307 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 CMIPQ8IY22 773 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 LRRC56Q8IYG6 542 aaPredicted RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 ANKRD13AQ8IZ07 590 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 CBARPQ8N350 705 aaPredicted RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 NUDT10Q8NFP7 164 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 NUDT11Q96G61 164 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 AHCYL2Q96HN2 611 aaKnown RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 TOX2Q96NM4 488 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 PLEKHF1Q96S99 279 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 SPATA25Q9BR10 227 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 SPON1Q9HCB6 807 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 DDX56Q9NY93 547 aaKnown RBP8.83□□□□□ -1
SDCBP-208ENST00000520228 TMPRSS11EQ9UL52 423 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 DENND2AQ9ULE3 1009 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 PPP2R3BQ9Y5P8 575 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 SHANK3Q9BYB0 1731 aa8.83□□□□□ -1
SDCBP-208ENST00000520228 MAPK8IP3Q9UPT6 1336 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 HTATSF1O43719 755 aaKnown RBP8.82□□□□□ -1
SDCBP-208ENST00000520228 BCAR1P56945 870 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 NFATC3Q12968 1075 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 SLC39A6Q13433 755 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 ITPK1Q13572 414 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 WDR72Q3MJ13 1102 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 FAM26FQ5R3K3 315 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 BCL6BQ8N143 479 aaPredicted RBP8.82□□□□□ -1
SDCBP-208ENST00000520228 ADAMTS17Q8TE56 1095 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 L2HGDHQ9H9P8 463 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 C14orf119Q9NWQ9 140 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 FBXO10Q9UK96 956 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 SBF2Q86WG5 1849 aa8.82□□□□□ -1
SDCBP-208ENST00000520228 DOT1LQ8TEK3 1739 aa8.81□□□□□ -1
SDCBP-208ENST00000520228 PRSS38A1L453 326 aa8.81□□□□□ -1
SDCBP-208ENST00000520228 TOP3AQ13472 1001 aaPredicted RBP8.81□□□□□ -1
SDCBP-208ENST00000520228 MCM10Q7L590 875 aa8.81□□□□□ -1
SDCBP-208ENST00000520228 ZNF761Q86XN6 746 aaPredicted RBP8.81□□□□□ -1
SDCBP-208ENST00000520228 LYSMD2Q8IV50 215 aa8.81□□□□□ -1
SDCBP-208ENST00000520228 TXNDC5Q8NBS9 432 aaKnown RBP8.81□□□□□ -1
SDCBP-208ENST00000520228 KRTAP4-8Q9BYQ9 185 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms