RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 PRPF4BQ13523 1007 aaKnown RBP10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SMC1AQ14683 1233 aaKnown RBP10.31□□□□□ -0.76
HDAC3-215ENST00000519474 PPP2R5AQ15172 486 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SF3A1Q15459 793 aaKnown RBP10.31□□□□□ -0.76
HDAC3-215ENST00000519474 ZRSR1Q15695 479 aaKnown RBP10.31□□□□□ -0.76
HDAC3-215ENST00000519474 MAPK6Q16659 721 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 ARSHQ5FYA8 562 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 ANKRD54Q6NXT1 300 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 FAM173BQ6P4H8 233 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SYCE2Q6PIF2 218 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 TAS1R3Q7RTX0 852 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 BRAPQ7Z569 592 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 ADHFE1Q8IWW8 467 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SMRP1Q8NCR6 262 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 DEPTORQ8TB45 409 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 LRRC15Q8TF66 581 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SLC22A17Q8WUG5 538 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 KIFC3Q9BVG8 833 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 APOL6Q9BWW8 343 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 PDZD7Q9H5P4 517 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 TMEM134Q9H6X4 195 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 FOXD4L1Q9NU39 408 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 SNTG2Q9NY99 539 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 PRKAG3Q9UGI9 489 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 PARP2Q9UGN5 583 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 FAM50BQ9Y247 325 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 CLIC4Q9Y696 253 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 TRANK1O15050 2925 aa10.31□□□□□ -0.76
HDAC3-215ENST00000519474 CCDC169A6NNP5 214 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 F8W810 466 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 N4BP3O15049 544 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 PLA2G4BP0C869 781 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 LIG1P18858 919 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 PDCP20941 246 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 OR1G1P47890 313 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 EFNA5P52803 228 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 ZP2Q05996 745 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 RESTQ13127 1097 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 BMS1Q14692 1282 aaKnown RBP10.3□□□□□ -0.76
HDAC3-215ENST00000519474 PTPAQ15257 358 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 TMEM119Q4V9L6 283 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 LLGL2Q6P1M3 1020 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 CABP7Q86V35 215 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 SUSD6Q92537 303 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 RABGGTAQ92696 567 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 AK8Q96MA6 479 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 KLHL5Q96PQ7 755 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 ACO2Q99798 780 aaKnown RBP10.3□□□□□ -0.76
HDAC3-215ENST00000519474 TRIM6Q9C030 488 aaPredicted RBP10.3□□□□□ -0.76
HDAC3-215ENST00000519474 PTPRHQ9HD43 1115 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 BLOC1S4Q9NUP1 217 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 MARCH5Q9NX47 278 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 RBM19Q9Y4C8 960 aaKnown RBP10.3□□□□□ -0.76
HDAC3-215ENST00000519474 HCFC2Q9Y5Z7 792 aa10.3□□□□□ -0.76
HDAC3-215ENST00000519474 NPHP3-ACAD11A0A0J9YXS1 232 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 VPS37CA5D8V6 355 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 K7ELQ4 463 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 PTGESO14684 152 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 SLC26A4O43511 780 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 HOXB8P17481 243 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 GUCY2CP25092 1073 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 UBA7P41226 1012 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 RAD51AP2Q09MP3 1159 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 GIT2Q14161 759 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 NAB2Q15742 525 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 ATF7IP2Q5U623 682 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 KIAA0319Q5VV43 1072 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 KANK3Q6NY19 840 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 USP49Q70CQ1 688 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 HACE1Q8IYU2 909 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 RNF168Q8IYW5 571 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 SPIRE2Q8WWL2 714 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 SNX21Q969T3 373 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 ZBTB45Q96K62 511 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 PAAF1Q9BRP4 392 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 COLEC11Q9BWP8 271 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 APOL5Q9BWW9 433 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 GPR62Q9BZJ7 368 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 CCSER1Q9C0I3 900 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 NT5C3AQ9H0P0 336 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 C17orf75Q9HAS0 396 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 KMT5AQ9NQR1 393 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 CHST7Q9NS84 486 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 ARHGAP28Q9P2N2 729 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 CACNG4Q9UBN1 327 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 MTMR6Q9Y217 621 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 TNFSF13BQ9Y275 285 aa10.29□□□□□ -0.76
HDAC3-215ENST00000519474 PRG3Q9Y2Y8 225 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 USP15Q9Y4E8 981 aaPredicted RBP10.29□□□□□ -0.76
HDAC3-215ENST00000519474 FSD2A1L4K1 749 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 ABLIM1O14639 778 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 SLC16A4O15374 487 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 BMP15O95972 392 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 SOD2P04179 222 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 SSBP05455 408 aaKnown RBP eCLIP10.28□□□□□ -0.76
HDAC3-215ENST00000519474 THP07101 528 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 CNPP09543 421 aaKnown RBP10.28□□□□□ -0.76
HDAC3-215ENST00000519474 EPCAMP16422 314 aa10.28□□□□□ -0.76
HDAC3-215ENST00000519474 IGFBP6P24592 240 aaPredicted RBP10.28□□□□□ -0.76
HDAC3-215ENST00000519474 MARCKSP29966 332 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms