RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 THTPAQ9BU02 230 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 FAM217BQ9NTX9 383 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 TK2O00142 265 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TLR2O60603 784 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CASP6P55212 293 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CDC37Q16543 378 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ALG11Q2TAA5 492 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 FAM26FQ5R3K3 315 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 PPM1LQ5SGD2 360 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 ATL2Q8NHH9 583 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 ELMO2Q96JJ3 720 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 SMAD5Q99717 465 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 GINM1Q9NU53 330 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TMCC3Q9ULS5 477 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 VSTM5A8MXK1 200 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 F5H423 210 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 IFRD1O00458 451 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 RASSF9O75901 435 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 BMP10O95393 424 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 STAT3P40763 770 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CRKP46108 304 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 EIF4A1P60842 406 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 PDAP1Q13442 181 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ZBED8Q8IZ13 594 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CYP4X1Q8N118 509 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 SUN3Q8TAQ9 357 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 SLC7A14Q8TBB6 771 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TUBGCP3Q96CW5 907 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CLCC1Q96S66 551 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 C17orf102A2RUQ5 167 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TOMM70O94826 608 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 KRT4P19013 534 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 BTG3Q14201 252 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ZNF284Q2VY69 593 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 ZCCHC8Q6NZY4 707 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ZNF248Q8NDW4 579 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TBCDQ9BTW9 1192 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 LNPEPQ9UIQ6 1025 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 PARD3Q8TEW0 1356 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 GPC1P35052 558 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 CLCN6P51797 869 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 PMS2P54278 862 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 PSMC5P62195 406 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 MRPL28Q13084 256 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ATP13A4Q4VNC1 1196 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 DEPDC1Q5TB30 811 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 POTEEQ6S8J3 1075 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 TREML1Q86YW5 311 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 FAM227BQ96M60 508 aa9.44□□□□□ -0.9
VCAN-208ENST00000512590 UBE2TQ9NPD8 197 aaPredicted RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 PAIP2BQ9ULR5 123 aaKnown RBP9.44□□□□□ -0.9
VCAN-208ENST00000512590 ANKRD36BQ8N2N9 1353 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 HEATR9A2RTY3 570 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 MEFVO15553 781 aaPredicted RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 NDUFS3O75489 264 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 GH2P01242 217 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 EIF2S1P05198 315 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 HOXA13P31271 388 aaPredicted RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 SDC4P31431 198 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 RPS7P62081 194 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 DNM1Q05193 864 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 ALCAMQ13740 583 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 CLEC16AQ2KHT3 1053 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ZSCAN23Q3MJ62 389 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MARK2Q7KZI7 788 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 RCOR2Q8IZ40 523 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 DBNDD2Q9BQY9 259 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ESYT1Q9BSJ8 1104 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ZCWPW1Q9H0M4 648 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MARK1Q9P0L2 795 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MAD2L2Q9UI95 211 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 NDUFAB1O14561 156 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 RPN1P04843 607 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 PLS3P13797 630 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 SMARCA1P28370 1054 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 GTF2A1P52655 376 aaPredicted RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 PEX3P56589 373 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 TTC39CQ8N584 583 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ZNF507Q8TCN5 953 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MRPL4Q9BYD3 311 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 CCDC90BQ9GZT6 254 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ING2Q9H160 280 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 FANCFQ9NPI8 374 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 CRLS1Q9UJA2 301 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 CASKIN1Q8WXD9 1431 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 SYNGAP1Q96PV0 1343 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MARSP56192 900 aaKnown RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 RCN1Q15293 331 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 ATL3Q6DD88 541 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 TMEM179Q6ZVK1 233 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 PLEKHM2Q8IWE5 1019 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 COG1Q8WTW3 980 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 RUBCNQ92622 972 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 CABS1Q96KC9 395 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 FHDC1Q9C0D6 1143 aaPredicted RBP9.43□□□□□ -0.9
VCAN-208ENST00000512590 BRD8Q9H0E9 1235 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 MCCC2Q9HCC0 563 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 USE1Q9NZ43 259 aa9.43□□□□□ -0.9
VCAN-208ENST00000512590 KPNA7A9QM74 516 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms