RNA–Protein interactions for RNA: ENST00000505589.1

NEDD9-210, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 571 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-210ENST00000505589 KSR1Q8IVT5 923 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 C4orf19Q8IY42 314 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 SUMF1Q8NBK3 374 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 RNF149Q8NC42 400 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 ZNF707Q96C28 371 aaPredicted RBP11.04□□□□□ -0.64
NEDD9-210ENST00000505589 MBOAT7Q96N66 472 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 DDX23Q9BUQ8 820 aaKnown RBP11.04□□□□□ -0.64
NEDD9-210ENST00000505589 CSRNP2Q9H175 543 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 DHX33Q9H6R0 707 aaKnown RBP11.04□□□□□ -0.64
NEDD9-210ENST00000505589 GMEB2Q9UKD1 530 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 ADAM28Q9UKQ2 775 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 CDV3Q9UKY7 258 aaKnown RBP11.04□□□□□ -0.64
NEDD9-210ENST00000505589 PCDHA4Q9UN74 947 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 IPPQ9Y573 584 aa11.04□□□□□ -0.64
NEDD9-210ENST00000505589 ZMYM2Q9UBW7 1377 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 FAM170BA6NMN3 283 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 STBD1O95210 358 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 POU2F2P09086 479 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 GCFC2P16383 781 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 XBP1P17861 261 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 RPS9P46781 194 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 GPC5P78333 572 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 CSTF1Q05048 431 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 SSRP1Q08945 709 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 PPP2R5CQ13362 524 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 SNW1Q13573 536 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 UBXN2BQ14CS0 331 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 MLF2Q15773 248 aaPredicted RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 PPM1LQ5SGD2 360 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 PPP4R3AQ6IN85 833 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 FUT10Q6P4F1 479 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 BLOC1S2Q6QNY1 142 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 ZNF852Q6ZMS4 543 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 Q6ZUG5 572 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 TAS1R1Q7RTX1 841 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 FERMT3Q86UX7 667 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 GAD1Q99259 594 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 MTRQ99707 1265 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 IER2Q9BTL4 223 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 SLC26A6Q9BXS9 759 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 ZSWIM4Q9H7M6 989 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 PPP4R2Q9NY27 417 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 DDX25Q9UHL0 483 aaKnown RBP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 KCNH3Q9ULD8 1083 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 DENND4AQ7Z401 1863 aa11.03□□□□□ -0.64
NEDD9-210ENST00000505589 SF3B1O75533 1304 aaKnown RBP eCLIP11.03□□□□□ -0.64
NEDD9-210ENST00000505589 EP300Q09472 2414 aaPredicted RBP11.02□□□□□ -0.65
NEDD9-210ENST00000505589 INO80B-WBP1J3KQ70 363 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 MAN2B1O00754 1011 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 CPLX1O14810 134 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 TBX3O15119 743 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 DEXIO95424 95 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 EFEMP2O95967 443 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 SPATA31D3P0C874 917 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 YWHABP31946 246 aaKnown RBP11.02□□□□□ -0.65
NEDD9-210ENST00000505589 MLH1P40692 756 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 ATXN1P54253 815 aaKnown RBP11.02□□□□□ -0.65
NEDD9-210ENST00000505589 PTENP60484 403 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 GRIK3Q13003 919 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 EPHA7Q15375 998 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 BMP2KLQ5H9B9 411 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 UBXN11Q5T124 520 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 MAMSTRQ6ZN01 415 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 SPATA31D4Q6ZUB0 917 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 KRT25Q7Z3Z0 450 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 SLFN12Q8IYM2 578 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 BLIDQ8IZY5 108 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 DCLK2Q8N568 766 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 ZBTB44Q8NCP5 570 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 SMG8Q8ND04 991 aaKnown RBP11.02□□□□□ -0.65
NEDD9-210ENST00000505589 DDX1Q92499 740 aaKnown RBP11.02□□□□□ -0.65
NEDD9-210ENST00000505589 BRF1Q92994 677 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 TCEANC2Q96MN5 208 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 SH2D3AQ9BRG2 576 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 TTPALQ9BTX7 342 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 NFKBIZQ9BYH8 718 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 MARCH5Q9NX47 278 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 GDE1Q9NZC3 331 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 VPS54Q9P1Q0 977 aa11.02□□□□□ -0.65
NEDD9-210ENST00000505589 GVINP1Q7Z2Y8 2422 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 LRP3O75074 770 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 DGAT1O75907 488 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 SCNN1GP51170 649 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 AFF1P51825 1210 aaKnown RBP11.01□□□□□ -0.65
NEDD9-210ENST00000505589 NTRK3Q16288 839 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 ADCK5Q3MIX3 580 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 XKR9Q5GH70 373 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 SLC27A1Q6PCB7 646 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 GRASPQ7Z6J2 395 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-210ENST00000505589 IFNLR1Q8IU57 520 aaPredicted RBP11.01□□□□□ -0.65
NEDD9-210ENST00000505589 CELF5Q8N6W0 485 aaKnown RBP11.01□□□□□ -0.65
NEDD9-210ENST00000505589 ETNPPLQ8TBG4 499 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 FGF14Q92915 247 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 TMEM143Q96AN5 459 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 CCDC43Q96MW1 224 aaKnown RBP11.01□□□□□ -0.65
NEDD9-210ENST00000505589 CNTNAP3BQ96NU0 1288 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 PHF20Q9BVI0 1012 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 CNTNAP3Q9BZ76 1288 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 FOXQ1Q9C009 403 aa11.01□□□□□ -0.65
NEDD9-210ENST00000505589 EPC1Q9H2F5 836 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms