RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 TFDP2Q14188 446 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 IL17AQ16552 155 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF677Q86XU0 584 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 TNFRSF25Q93038 417 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ZIM3Q96PE6 472 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ELAC2Q9BQ52 826 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 TMEM39BQ9GZU3 492 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 IGSF9BQ9UPX0 1349 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 COL14A1Q05707 1796 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 AGTP01019 485 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 BBS9Q3SYG4 887 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 GJB7Q6PEY0 223 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 CYFIP1Q7L576 1253 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 LRRN4CLQ8ND94 238 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ATL2Q8NHH9 583 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 C1orf54Q8WWF1 131 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RNF25Q96BH1 459 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 CHMP6Q96FZ7 201 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 TRIM51Q9BSJ1 452 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 BCAP29Q9UHQ4 241 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RGPD2P0DJD1 1756 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RASA4BC9J798 803 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RASA4O43374 803 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 ZBED1O96006 694 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 CA4P22748 312 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 CAP2P40123 477 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 KYAT1Q16773 422 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 DUOXA2Q1HG44 320 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 KLHL38Q2WGJ6 581 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 COL23A1Q86Y22 540 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 GPRASP2Q96D09 838 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 RPS6KC1Q96S38 1066 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 TRAF3IP3Q9Y228 551 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 TTLL3Q9Y4R7 772 aa11.47□□□□□ -0.57
LIMCH1-205ENST00000503057 WTIPA6NIX2 430 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 SMIM22K7EJ46 135 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 CRCPO75575 148 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 GUCY1A3Q02108 690 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 GRM1Q13255 1194 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 TRMT10CQ7L0Y3 403 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 EPM2AIP1Q7L775 607 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 PRMT6Q96LA8 375 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 VCXQ9H320 206 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 ZBTB12Q9Y330 459 aaPredicted RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 TTLL4Q14679 1199 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 GEN1Q17RS7 908 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 BZW1Q7L1Q6 419 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 RHPN2Q8IUC4 686 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 MICALL2Q8IY33 904 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 FAM129AQ9BZQ8 928 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 CARD9Q9H257 536 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 MYOZ2Q9NPC6 264 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 AIPL1Q9NZN9 384 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 RFC5P40937 340 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 PSMC4P43686 418 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 MYBPC2Q14324 1141 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 EMC2Q15006 297 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 MEI1Q5TIA1 1274 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 SRLQ86TD4 932 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 ZNF507Q8TCN5 953 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 KLC2Q9H0B6 622 aa11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 DDX4Q9NQI0 724 aaKnown RBP11.46□□□□□ -0.57
LIMCH1-205ENST00000503057 SPDYE2BA6NHP3 402 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 KLRC4O43908 158 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 EXTL3O43909 919 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 SPDYE6P0CI01 402 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 RPS12P25398 132 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 RHBDL3P58872 404 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 MUM1Q2TAK8 710 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 MUM1L1Q5H9M0 696 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 PLA2G4FQ68DD2 849 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 RCOR2Q8IZ40 523 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 ACTRT1Q8TDG2 376 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 RIN2Q8WYP3 895 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 TRAIPQ9BWF2 469 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 SYNPO2Q9UMS6 1093 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 MAPK13O15264 365 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 ITIH2P19823 946 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 ECE1P42892 770 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 EN1Q05925 392 aaPredicted RBP11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 CCDC38Q502W7 563 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 PHLDB3Q6NSJ2 640 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 JAMLQ86YT9 394 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 RBM46Q8TBY0 533 aaKnown RBP11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM149B1Q96BN6 582 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 IDI2Q9BXS1 227 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 PITPNM3Q9BZ71 974 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 EFCC1Q9HA90 598 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 TBX20Q9UMR3 447 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 ALG6Q9Y672 507 aa11.46□□□□□ -0.58
LIMCH1-205ENST00000503057 ROBO3Q96MS0 1386 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SYNJ2BP-COX16A0A087WUM0 186 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 DCTN3O75935 186 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 GUCY2CP25092 1073 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CIITAP33076 1130 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 STAT5BP51692 787 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PDE1BQ01064 536 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PRKCEQ02156 737 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 DRP2Q13474 957 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms