RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DHX34Q14147 1143 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FAM160B2Q86V87 743 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SUGP1Q8IWZ8 645 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 OTUD6BQ8N6M0 293 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MAGOHBQ96A72 148 aaKnown RBP17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TLCD1Q96CP7 247 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 AGBL1Q96MI9 1066 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ACCSQ96QU6 501 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KCNH7Q9NS40 1196 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CTTNBP2NLQ9P2B4 639 aa17.33■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GOLGA6L10A0A0M3HER8 536 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SGPL1O95470 568 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PAEPP09466 180 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RARRES1P49788 294 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PEX5P50542 639 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 DRG2P55039 364 aaKnown RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GPC5P78333 572 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KRT71Q3SY84 523 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ZNF746Q6NUN9 644 aaPredicted RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MICALCLQ6ZW33 695 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PRELID2Q8N945 189 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CYFIP2Q96F07 1278 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TEPSINQ96N21 525 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 LARSQ9P2J5 1176 aaKnown RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NOCTQ9UK39 431 aaKnown RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PFASO15067 1338 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ZNF536O15090 1300 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FSBPO95073 299 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PLS3P13797 630 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ALCAMQ13740 583 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GPATCH11Q8N954 259 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 VTI1AQ96AJ9 217 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 C18orf8Q96DM3 657 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ZSWIM1Q9BR11 485 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GRHL1Q9NZI5 618 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 HSPBP1Q9NZL4 362 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CHORDC1Q9UHD1 332 aaPredicted RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 DBR1Q9UK59 544 aaKnown RBP17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FEM1BQ9UK73 627 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 USP20Q9Y2K6 914 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SNX24Q9Y343 169 aa17.32■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SCN4AP35499 1836 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MIF4GDA9UHW6 222 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PHF2O75151 1096 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RTN2O75298 545 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KIAA0754O94854 1291 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SHBGP04278 402 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CTNNA2P26232 953 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MCCD1P59942 119 aaPredicted RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SPP2Q13103 211 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CLUL1Q15846 466 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 QPCTQ16769 361 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FBXW10Q5XX13 1052 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 XXYLT1Q8NBI6 393 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RAPGEF5Q92565 580 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RPS6KC1Q96S38 1066 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TMEM117Q9H0C3 514 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PCDHA3Q9Y5H8 950 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ZNFX1Q9P2E3 1918 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TMEM110-MUSTN1A8MSY1 372 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MTA2O94776 668 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 COMTP21964 271 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CAP2P40123 477 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 EIF3BP55884 814 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 GTF2BQ00403 316 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ODF2Q5BJF6 829 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TTC27Q6P3X3 843 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NOP9Q86U38 636 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 C3orf20Q8ND61 904 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 EPS8L1Q8TE68 723 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CD101Q93033 1021 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 RNF25Q96BH1 459 aaPredicted RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 DCPSQ96C86 337 aaKnown RBP17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 KREMEN1Q96MU8 473 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CXorf56Q9H5V9 222 aa17.31■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SYNGAP1Q96PV0 1343 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 WDR90Q96KV7 1748 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PMM2O15305 246 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CAND2O75155 1236 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ADRB2P07550 413 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 NUDT17P0C025 328 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ALAS1P13196 640 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PLTPP55058 493 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CETN1Q12798 172 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 MMS22LQ6ZRQ5 1243 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 HAUS6Q7Z4H7 955 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CPNE8Q86YQ8 564 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FAM71AQ8IYT1 594 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 FBXO25Q8TCJ0 367 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CLEC4DQ8WXI8 215 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 SH2D3AQ9BRG2 576 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ST6GALNAC4Q9H4F1 302 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 AGO4Q9HCK5 861 aaKnown RBP17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 ACP6Q9NPH0 428 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 PCYOX1Q9UHG3 505 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 DDX20Q9UHI6 824 aaKnown RBP17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 CAPN7Q9Y6W3 813 aa17.3■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 TMEM150BA6NC51 233 aa17.29■□□□□ 0.36
MSH5-SAPCD1-208ENST00000498473 IQCA1LA6NCM1 817 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms