RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	TMC3	Q7Z5M5	1100 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ZBTB46	Q86UZ6	589 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	KIF18B	Q86Y91	864 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	PASD1	Q8IV76	773 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	NXPE1	Q8N323	547 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	MAGEB6	Q8N7X4	407 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	SPATA5	Q8NB90	893 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	OR2W6P	Q8NHA6	318 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	NPLOC4	Q8TAT6	608 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	RNF141	Q8WVD5	230 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	USP7	Q93009	1102 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	EVI5L	Q96CN4	794 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	MIPEP	Q99797	713 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ACSS3	Q9H6R3	686 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	CERS4	Q9HA82	394 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	GNL3L	Q9NVN8	582 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	GFOD1	Q9NXC2	390 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	PRR13	Q9NZ81	148 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	SAMD15	Q9P1V8	674 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	ABCF2	Q9UG63	623 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	RALY	Q9UKM9	306 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	APOBEC2	Q9Y235	224 aa	Known RBP	5.11	□□□□□ -1.59
VPS52-222	ENST00000495981	PCDHA8	Q9Y5H6	950 aa		5.11	□□□□□ -1.59
VPS52-222	ENST00000495981		A0A0A0MRY4	1105 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	E2F8	A0AVK6	867 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	MED19	A0JLT2	244 aa	Predicted RBP	5.1	□□□□□ -1.59
VPS52-222	ENST00000495981		H0Y8X5	98 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	SRGAP3	O43295	1099 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	PQBP1	O60828	265 aa	Known RBP	5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	CNMD	O75829	334 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	FBXO21	O94952	628 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	CKM	P06732	381 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	CYBA	P13498	195 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	KCNJ6	P48051	423 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	TIMM10	P62072	90 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	SPP2	Q13103	211 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	TESK1	Q15569	626 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ABCB5	Q2M3G0	1257 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	CREB3L3	Q68CJ9	461 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ZNF365	Q70YC5	407 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	GPR142	Q7Z601	462 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	FRS2	Q8WU20	508 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	DCAF4	Q8WV16	495 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	JPH3	Q8WXH2	748 aa	Predicted RBP	5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	SOCS4	Q8WXH5	440 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	HERVK_113	Q902F9	699 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	COPS5	Q92905	334 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ROBO3	Q96MS0	1386 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	API5	Q9BZZ5	524 aa	Known RBP	5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	CYP4F12	Q9HCS2	524 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ENAM	Q9NRM1	1142 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	TMEFF2	Q9UIK5	374 aa	Predicted RBP	5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ZNF180	Q9UJW8	692 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	PCOLCE2	Q9UKZ9	415 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	ZBTB21	Q9ULJ3	1066 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	NPFFR2	Q9Y5X5	522 aa		5.1	□□□□□ -1.59
VPS52-222	ENST00000495981	BAZ2A	Q9UIF9	1905 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	PLXNA1	Q9UIW2	1896 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	SETX	Q7Z333	2677 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981		B4E1Z4	1266 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	DYNC1LI2	O43237	492 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	MSC	O60682	206 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	LPXN	O60711	386 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	CP	P00450	1065 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	KRT18	P05783	430 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	CLTB	P09497	229 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	IL9	P15248	144 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	CSF2RA	P15509	400 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	ZSCAN20	P17040	1043 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	HOXA7	P31268	230 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	FLT3	P36888	993 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	CTSK	P43235	329 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	GCLC	P48506	637 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	SCNN1B	P51168	640 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	MECP2	P51608	486 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	HERVK_113	P62684	666 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	SCRN1	Q12765	414 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	AAK1	Q2M2I8	961 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	FAM47A	Q5JRC9	791 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	UBE2R2	Q712K3	238 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	PLEKHH3	Q7Z736	793 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	CCDC103	Q8IW40	242 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	TEX11	Q8IYF3	940 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	AGGF1	Q8N302	714 aa	eCLIP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	IGSF22	Q8N9C0	903 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	ARHGAP45	Q92619	1136 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	LENG1	Q96BZ8	264 aa	Predicted RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	TRIM11	Q96F44	468 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	C12orf42	Q96LP6	360 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	DBNDD2	Q9BQY9	259 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	MENT	Q9BUN1	341 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	PIDD1	Q9HB75	910 aa		5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	PIH1D3	Q9NQM4	214 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	HERC5	Q9UII4	1024 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	DBNL	Q9UJU6	430 aa	Known RBP	5.09	□□□□□ -1.59
VPS52-222	ENST00000495981	FBXL21	Q9UKT6	434 aa		5.09	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms