RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ZNF543Q08ER8 600 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MOGSQ13724 837 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 STAT4Q14765 748 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 SLC5A9Q2M3M2 681 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 THEMIS2Q5TEJ8 643 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 AADACL2Q6P093 401 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 POTEGQ6S5H5 508 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MTHFD1LQ6UB35 978 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 OTUD6AQ7L8S5 288 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 CATSPER3Q86XQ3 398 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MAPKAPK5Q8IW41 473 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 CNBD1Q8NA66 436 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 RBBP8NLQ8NC74 664 aaPredicted RBP10.37□□□□□ -0.75
SYNE1-230ENST00000495090 SNF8Q96H20 258 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 TRAPPC9Q96Q05 1148 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 LRRC37BQ96QE4 947 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 PLVAPQ9BX97 442 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MYLK2Q9H1R3 596 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 VCXQ9H320 206 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 DCLRE1BQ9H816 532 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 JMJD4Q9H9V9 463 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 MTMR4Q9NYA4 1195 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 EURLQ9NYK6 297 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 CTTNBP2NLQ9P2B4 639 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 KCNG1Q9UIX4 513 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 PCDHB13Q9Y5F0 798 aa10.37□□□□□ -0.75
SYNE1-230ENST00000495090 FRMPD2Q68DX3 1309 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 ZMYM2Q9UBW7 1377 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 IGKV6D-41A0A0C4DH26 115 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 FSCN2O14926 492 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 SORBS3O60504 671 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 PPP1R11O60927 126 aaPredicted RBP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 SMIM24O75264 130 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 TBCAO75347 108 aaKnown RBP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 GCNT3O95395 438 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 ACSL3O95573 720 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 GH1P01241 217 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 ABHD2P08910 425 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 GSTA2P09210 222 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 PYGMP11217 842 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 BCRP11274 1271 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 COMTP21964 271 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 MUTP22033 750 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 MARCKSL1P49006 195 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 PTK6Q13882 451 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 CEP128Q6ZU80 1094 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 CCDC25Q86WR0 208 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 VSIG1Q86XK7 387 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 GDAP1Q8TB36 358 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 ETNPPLQ8TBG4 499 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 KCNV2Q8TDN2 545 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 TEKT4Q8WW24 435 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 MAIP1Q8WWC4 291 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 DNAJC9Q8WXX5 260 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 GJA10Q969M2 543 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 FAM136AQ96C01 138 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 ERP27Q96DN0 273 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 NUDCD1Q96RS6 583 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 CRAMP1Q96RY5 1269 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 CCDC77Q9BR77 488 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 DNAJC18Q9H819 358 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 PSTPIP2Q9H939 334 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 SAP30BPQ9UHR5 308 aaKnown RBP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 LNPEPQ9UIQ6 1025 aa10.36□□□□□ -0.75
SYNE1-230ENST00000495090 MYH14Q7Z406 1995 aaKnown RBP10.36□□□□□ -0.75
SYNE1-230ENST00000495090 FAM47DPA6NHR8 397 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 ZBTB5O15062 677 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 PRPF4O43172 522 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 ASMTLO95671 621 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 FTLP02792 175 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SPATA31C1P0DKV0 1188 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GNAT1P11488 350 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GZMAP12544 262 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 PTDSS1P48651 473 aaKnown RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 KRT17Q04695 432 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 AP3B2Q13367 1082 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GPATCH4Q5T3I0 446 aaKnown RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 TRIM68Q6AZZ1 485 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 RNF207Q6ZRF8 634 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 PALB2Q86YC2 1186 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 ADGRF4Q8IZF3 695 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 ZNF398Q8TD17 642 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 GRK7Q8WTQ7 553 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 CRYGNQ8WXF5 182 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SLC7A6OSQ96CW6 309 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 IFT43Q96FT9 208 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 TRAIPQ9BWF2 469 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 TBC1D10AQ9BXI6 508 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 FOXP3Q9BZS1 431 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SAR1AQ9NR31 198 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 DMAC2Q9NW81 257 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 STOML1Q9UBI4 398 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 ZMYND8Q9ULU4 1186 aaPredicted RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 CHKBQ9Y259 395 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 LRCH1Q9Y2L9 728 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 THRAP3Q9Y2W1 955 aaKnown RBP10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SPATA31A5Q5VU36 1347 aa10.35□□□□□ -0.75
SYNE1-230ENST00000495090 SPATA31A6Q5VVP1 1343 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms