RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 hCG_1984214I3L0E3 225 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 GAS7O60861 476 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 C8AP07357 584 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 HNRNPA1P09651 372 aaKnown RBP eCLIP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 SRGAP2CP0DJJ0 459 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 NCLP19338 710 aaKnown RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 SFNP31947 248 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 SCNN1GP51170 649 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 CCR3P51677 355 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 JAK3P52333 1124 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 NUCB1Q02818 461 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 FZD5Q13467 585 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 TARBP2Q15633 366 aaKnown RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 XKR3Q5GH77 459 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 SMC5Q8IY18 1101 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 RNF168Q8IYW5 571 aaPredicted RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 ZNF713Q8N859 430 aaPredicted RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 C12orf50Q8NA57 414 aaPredicted RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 MCRS1Q96EZ8 462 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 GAD1Q99259 594 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 JPH2Q9BR39 696 aaPredicted RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 APOL6Q9BWW8 343 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 TEKT3Q9BXF9 490 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 NIFKQ9BYG3 293 aaKnown RBP10.38□□□□□ -0.75
COL17A1-207ENST00000488320 GPR62Q9BZJ7 368 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 MIOSQ9NXC5 875 aa10.38□□□□□ -0.75
COL17A1-207ENST00000488320 CNTNAP5Q8WYK1 1306 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 IGKV6-21A0A0C4DH24 114 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 TMEM150BA6NC51 233 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 ARL5CA6NH57 179 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 CHURC1-FNTBB4DL54 471 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 MAFO75444 373 aaPredicted RBP10.37□□□□□ -0.75
COL17A1-207ENST00000488320 MLH1P40692 756 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 CXCL12P48061 93 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 FNTBP49356 437 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 SHC2P98077 582 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 NCBP1Q09161 790 aaKnown RBP10.37□□□□□ -0.75
COL17A1-207ENST00000488320 UBXN11Q5T124 520 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 PRSS55Q6UWB4 352 aaPredicted RBP10.37□□□□□ -0.75
COL17A1-207ENST00000488320 CEP68Q76N32 757 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 MIER3Q7Z3K6 550 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 SRGAP1Q7Z6B7 1085 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 CEP57Q86XR8 500 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 EXOC6Q8TAG9 804 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 ING5Q8WYH8 240 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 RABGGTAQ92696 567 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 MBOAT7Q96N66 472 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 PLA2G2FQ9BZM2 168 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 CHRDQ9H2X0 955 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 UNC45AQ9H3U1 944 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 BRD9Q9H8M2 597 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 C6orf50Q9HD87 102 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 FBXW11Q9UKB1 542 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 ADAM28Q9UKQ2 775 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 ZMIZ1Q9ULJ6 1067 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 MRPS23Q9Y3D9 190 aaKnown RBP10.37□□□□□ -0.75
COL17A1-207ENST00000488320 IPPQ9Y573 584 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 COL4A3BPQ9Y5P4 624 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 RBM8AQ9Y5S9 174 aaKnown RBP10.37□□□□□ -0.75
COL17A1-207ENST00000488320 FAM208BQ5VWN6 2430 aa10.37□□□□□ -0.75
COL17A1-207ENST00000488320 AXIN1O15169 862 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 HRO43593 1189 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 ECI2O75521 394 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 EFEMP2O95967 443 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 TDGF1P13385 188 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 CHMLP26374 656 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 HOXA11P31270 313 aaPredicted RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 CNR2P34972 360 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 DSC1Q08554 894 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 SRSF5Q13243 272 aaKnown RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 RTN1Q16799 776 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 PABPC1LQ4VXU2 614 aaKnown RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 LRCH2Q5VUJ6 765 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 GPR65Q8IYL9 337 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 HACE1Q8IYU2 909 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 REXO1Q8N1G1 1221 aaKnown RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 SMG8Q8ND04 991 aaKnown RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 CRYGNQ8WXF5 182 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 FAM3CQ92520 227 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 MAP4K1Q92918 833 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 ZFP42Q96MM3 310 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 IER2Q9BTL4 223 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 TRIM6Q9C030 488 aaPredicted RBP10.36□□□□□ -0.75
COL17A1-207ENST00000488320 IFT122Q9HBG6 1241 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 HCFC1R1Q9NWW0 138 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 HES2Q9Y543 173 aa10.36□□□□□ -0.75
COL17A1-207ENST00000488320 C1QTNF9BB2RNN3 333 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 MSH4O15457 936 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 ZBTB43O43298 467 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 ERLIN2O94905 339 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 C1QTNF9P0C862 333 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 SATB1Q01826 763 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 GRM2Q14416 872 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 AXDND1Q5T1B0 1012 aaPredicted RBP10.35□□□□□ -0.75
COL17A1-207ENST00000488320 HEATR6Q6AI08 1181 aaKnown RBP10.35□□□□□ -0.75
COL17A1-207ENST00000488320 TANGO2Q6ICL3 276 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 UNQ6494/PRO21346Q6UXR6 183 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 MAMSTRQ6ZN01 415 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 LONP2Q86WA8 852 aa10.35□□□□□ -0.75
COL17A1-207ENST00000488320 NPAS3Q8IXF0 933 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms